XLOC_006751 (nusap1)


Basic Information

Item Value
gene id XLOC_006751
gene name nusap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33251721 ~ 33256667 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013000
AAACGACAATCACAAACCCAAACTAACCGATCCGACATCAGAGAGCAGTCGATTACTGTATTATACTTGTGCCTCTTCAACTTACGTCGATTTTATAGGCAATAACATGGATTTAGACTCGCTAAAATATGCGGAATTGCAGCGCCTCGCCAAAGAAGTGGGACTTAAAGCGAATATGAAGGCTGAAAGGCTGTTGAAGGCTTTAAAAGAACACTTTTCACAACAGCAGCTTTCTGAGAACGGCAATGACGCTGCCGCTTCGGACGCGCACGATTCTGTTCCTCCTGTGGACGCGCACGCTGCAACATATGTGACCGAGCGCAGAGGAAAGGGCCGCACCGCCAAGAGGAAGCTCAGTGAACCAACACCGATCATTTCTCCGACTGAAGAAAAAACACCACAAGATGAGGGTCGAAGGGGCTCCAAGAGAAGAAAGGTGTCTTCAGCCAAGGATACACAGACTCCAGTTCCAGCTGAAGCTTTCGCTAAAGAGAATACTATGGAGAAAGAATCTGGAGATCTAAATCCAGATTCTGAAAGTGGTCCAACAGAAACGGGTGTGAAAGGGAGAAGAACAGTTGGTAAAATTCCCCGCCATAAAGGTCTGATGAAGAGAAAACCTGCAATGCGGCCGACAACTCctaACTTCAAGAAACTCCACGAGGCTCACTTCAAAAAGATGGAGTCCATCGATTCGTACGTCcaaagaaagaacaaacaaatggaAGTGCTCAGGAATTCAGTTAAAGAGCTGAAGACCCTGTCAGAAAAGACACTGAAGAAACCCGAGGCAAAGGCTCAAACTAAAGTGCCTTCTAGCCGAGCATCTCTCTTCAGTCCTGCAGTGCAGAAGACAGCAGTGCCAGAAAGACGCAGACTCACTCAGCAGCCGGTCAGCAAGTCCGCTTTAAAGGACACCGCCACCTTCAGGCCAACTGTCCTCACCACCAATAAAATCAATGTCCGGTTTTCTCAAGCCACTCAAGATAATGAATACAAGCGTTCGCTGGTGAAGACTCCAGCTCGTATGTCTCCTCACATGCCTCTCACCTCCACTCCAGGGAGAAAATCTGATGTTCGTTCCAAAGCTGAACTAAACAGAAGTGCTAGCACCATCACTAAAACACCCGGGGCTACGCCATTTGTTTTTAATGGCAACAACAGCATTTCCACCACGCCTGGCACCACCAAGAAAAACACATTTGACCTGAAGGCCAGTCTCTCTCGTCCACTGACCTACAAACCCCACAAAGGAAAACTGAAGCCTTTTGGAGATGCACAGGAGAACACGGCACTTAACAAATCCCAGACTGTCCCTTCACATCAGAAAAACTACAAACAGCACCAGGTTCAAACCCGAGAGGAACGACGTGTCAAGCACACAGAAGATCGAAAGCAGAAGAAAGAGAAGATGTTGGGTGCCAGACGAGGTTTAGTTATGGCCTAACTTGCAGTGTTTTTACTACTTTTACTTTGACACTCACTGTACATGTTTAGCTTTCGTCtcgtttgtctgttttttttccaaactaTTGTACATTTTTGCTCTTTTCTAAACACTTGTTCTTTGCTGACTCTTGTTGTCATTCTACTAAAGTCTTTTAGCATTTCTAGACGAGGTTTtttgatactttgttttttatgtgAAGAAAAACTATTCTGACCAATATTATTTGGTATGAATGGTTGAAATGTATTTGCTTCAGTGTATTGTAAAAACAAGAAAagatcaaaacaaaacattggCCATACAAAAAGTTTGTTTGAAACTTGAGTGATAAATTATCATTTTGTACTTTTTCATGGGgtcatattttatgtatatttgtcTGTATGAACGATGAtgtctctttaaaaaaacaaacaaacgtccAAGTACTTTTTTCCCgaaaagtttttaattaaagaatttgTTAATCCATA

Function

symbol description
nusap1 Predicted to enable microtubule binding activity. Acts upstream of or within neural crest cell migration. Predicted to be located in spindle microtubule. Predicted to be active in mitotic spindle and nucleolus. Is expressed in blood island; brain; head; neural crest; and proliferative region. Orthologous to human NUSAP1 (nucleolar and spindle associated protein 1).

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0007049 cell cycle biological_process
GO:0040001 establishment of mitotic spindle localization biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0051301 cell division biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0072686 mitotic spindle cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030827-5 Predicted to enable microtubule binding activity. Acts upstream of or within neural crest cell migration. Predicted to be located in spindle microtubule. Predicted to be active in mitotic spindle and nucleolus. Is expressed in blood island; brain; head; neural crest; and proliferative region. Orthologous to human NUSAP1 (nucleolar and spindle associated protein 1).

Ensembl:

ensembl_id ENSDARG00000002403

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013000 True 1923 mRNA 0.43 12 33251721 33256667

Neighbor

gene id symbol gene type direction distance location
XLOC_006750 rtf1 coding downstream 5567 33229446 ~ 33246154 (-)
XLOC_006749 golga5 coding downstream 24310 33211014 ~ 33227411 (-)
XLOC_006748 fbln5 coding downstream 44297 33155428 ~ 33207424 (-)
XLOC_006747 TC2N coding downstream 97832 33141279 ~ 33153889 (-)
XLOC_006746 plek2 coding downstream 117110 33123484 ~ 33134611 (-)
XLOC_006752 NA coding upstream 4464 33261131 ~ 33301170 (-)
XLOC_006753 tmem234 coding upstream 58006 33314673 ~ 33317398 (-)
XLOC_006754 si:dkey-71p21.13 coding upstream 63396 33320063 ~ 33321541 (-)
XLOC_006755 zgc:172120 coding upstream 85788 33342455 ~ 33362191 (-)
XLOC_006756 btbd6a coding upstream 137449 33394116 ~ 33398735 (-)
XLOC_006471 BX537274.2 misc downstream 22986816 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32425496 825904 ~ 826225 (-)
XLOC_006741 NA non-coding downstream 255225 32946711 ~ 32996496 (-)
XLOC_006738 CU019663.1 non-coding downstream 444080 32793864 ~ 32807641 (-)
XLOC_006731 NA non-coding downstream 684465 32457931 ~ 32567256 (-)
XLOC_006732 NA non-coding downstream 756849 32492067 ~ 32494872 (-)
XLOC_006730 NA non-coding downstream 795728 32069898 ~ 32455993 (-)
XLOC_006757 NA non-coding upstream 195771 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 200856 33457523 ~ 33459318 (-)
XLOC_006768 BX649403.1 non-coding upstream 1381962 34638629 ~ 34638746 (-)
XLOC_006769 BX649403.2 non-coding upstream 1387483 34644150 ~ 34644281 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07401962_07405598 NUSAP1 coding CI01000012 null 7401962 ~ 7405598 (+)