CI01000001_04773238_04776581 (MGC83062, GID8, GID8.L, CT011, GID8A, GID8B)


Basic Information

Item Value
gene id CI01000001_04773238_04776581
gene name MGC83062, GID8, GID8.L, CT011, GID8A, GID8B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4772701 ~ 4777329 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04773238_04776581.mRNA
GTATAAATGCTTGGAGAATATCTGTGTTTATTAACGTTTATGTGTGGTTGTTGTTACGTACAGTATTACATCTGTTGTTGTCTTCTCTCCAGCGGTACAGGCTTCAATGTTATGATACAGGCCTTTATAATTATAGCTTCCGGTCATCATAAGCGCAAATGTCATCTTGCTTGATTTACAAAACATTATTGATTCATATTTATTCTCATTGTATATTCGCTGATTCGTTACCGTTTTCTATAGATTTTTGTGTCGTCTTTCTCGAACTAAAATCTTTATAAATTAAACATAATAGTATGTGTTTATATCAAGAGTGTCATTTGCAGACTATACAGTAACAAATATGTATTTGAAATGACCTTAATTGAACTCAGTTATTTAACTTAAGAAGAATGTAACTGTGAGATTTATAACAAACAATACATAAAAAATGTATTTAACTTTTCAAGCCGTGTGTCTATTCCCATGACTAAAACTGTCATTTTAAATGTTATTTATCATGTTTTTATATTTTTTGTCAATGCAGAACACTTCATGATGAGTTATGCTGAAAAGCCAGAGGACATAACACGCGAGGAGTGGATGGAAAAGCTCAATAATGTTCACATTCAACGGGCAGACATGAATCGACTCATTATGAATTATCTGGTGACAGAGGGTTTTAAAGAGGCAGCTGAGAAGTTTAGGATGGAATCAGGCATTGAACCAAGTGTTGATCTGGACTCTCTGGATGAAAGGATAAAAATTAGGGAGATGGTCCTGAAGGGACAAATACAAGAGGCCATTGCACTGATCAACAGTCTGCATCCTGAGCTGCTGGACACAAACCGCTACCTGTACTTTCATCTGCAGCAACAACACCTGATTGAGTTGATTCGCCTGAGGGAAACCGAGGCTGCATTGGAGTTTGCACAGACACAGTTGGCTGAACAGGGAGAGGAAAGCCGAGAGTGTCTGACAGAGATGGAGCGCACCCTTGCACTCCTGGCGTTTGATAACCCAGAAGAGTCACCCTTCGGAGACCTGCTTAACATGATGCAGAGACAGAAGGTGTGGAGCGAGGTAAACCAGGCGGTGCTGGACTACGAAAACAGGGAGTCGACACCGAAACTTGCCAAACTCCTCAAACTGCTGCTGTGGGCTCAGAACGAGTTGGACCAGAAGAAAGTCAAGTACCCCAAAATGACAGATCTTAGCAAAGGCACCATCGAGGACCCCAAGTGAAAACGAATCGGCATCTCTATGCTTGCATTCTGCGGGGAACGAAATGGACGCTTTCCCTTTCCTTAACTATTTATACTCAGTGACTGACACTTAAACATCCTTTTATCAATCTTTTGTTTTGTTTACTTGTTGCTTATCAGAGACTTTGCATTACATGGGCTGTGGAAATGAGATTAAGATTTAAGGATGACTTCTAGCCAAAATGGAAACACTTTTTATCGCAGATGGATTTCTGTGATTTTTTTTTTTTTTTTTTTTTTTTTTTGTTACCAGCTGAGTTGATTGCATTTTAGCCATTTTGTTTTTGCAGAGGATTATTATCTTTCTATTTTGTCAGTGAATGTTCAGAAAGTCTACAAATACAGTTGAGGACTGAACCACACTATTTAGATTTACCTTCTATTTGACTGTGTCTGCTGATGTGAGGTACCTAAGGCACAATAGTGGTGTCATCAAGGACTGTGAATTGATTGTACCAATACGATGAACGAGTTCTGTGTGCTTTCACAACTTTGGTTTGCAGTGCACGGGTATACATTTTGTATGCGTGTAAAAGGGCCCCGTCAAAGAAAATCTGCCCTTTTTCGAGTACTAATGTTATTGCATTATAATGTTATAAAGTCATGTGACATTGTTTTCTACTGTACATTGTCATAGTATTCCTGCTTACATTGACATTCAATTGTGATTTATAGATATTGCAGAGATCAAGTTGTAAGCTTCTGAAGTCAGATGCTTTACTTAGGTA

Function

symbol description
gid8b Involved in positive regulation of canonical Wnt signaling pathway. Acts upstream of or within determination of dorsal identity. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; hatching gland; mesoderm; notochord; and tail bud. Orthologous to human GID8 (GID complex subunit 8 homolog).
gid8a Involved in positive regulation of canonical Wnt signaling pathway. Acts upstream of or within determination of dorsal identity. Predicted to be active in cytoplasm and nucleus. Orthologous to human GID8 (GID complex subunit 8 homolog).
gid8 Predicted to enable protein homodimerization activity. Involved in positive regulation of canonical Wnt signaling pathway and positive regulation of cell population proliferation. Located in cell junction; cytosol; and nucleoplasm. Part of ubiquitin ligase complex.

GO:

id name namespace
GO:0005654 nucleoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04773238_04776581.mRNA True 1972 mRNA 0.38 4 4772701 4777329

Neighbor

gene id symbol gene type direction distance location
CI01000001_04723418_04724292 NA coding upstream 48343 4723354 ~ 4725671 (+)
CI01000001_04701645_04713999 NA coding upstream 58548 4701645 ~ 4714153 (+)
CI01000001_04688934_04700615 HCK, SRMS coding upstream 71997 4688934 ~ 4700704 (+)
CI01000001_04624476_04679572 NOL4LB coding upstream 92872 4624476 ~ 4679829 (+)
CI01000001_04586080_04595939 NA coding upstream 176283 4585896 ~ 4596418 (+)
CI01000001_04779079_04792659 SLC17A9B, SLC17A9 coding downstream 1608 4778937 ~ 4792827 (+)
CI01000001_04901365_04901652 NA coding downstream 123946 4901275 ~ 4902567 (+)
CI01000001_04914279_04922772 RND1B, RND1, RND1A coding downstream 136821 4914150 ~ 4923679 (+)
CI01000001_04936808_04943256 PRIM1 coding downstream 159479 4936808 ~ 4943455 (+)
CI01000001_04950531_04960550 NACA, NACA.2 coding downstream 173202 4950531 ~ 4960695 (+)
G15395 NA non-coding upstream 14282 4753717 ~ 4758419 (+)
G15389 NA non-coding upstream 45961 4598677 ~ 4726740 (+)
G15404 NA non-coding upstream 206159 4566270 ~ 4566542 (+)
G15371 NA non-coding upstream 281320 4486920 ~ 4491381 (+)
G15416 NA non-coding downstream 20147 4797476 ~ 4797794 (+)
G15419 NA non-coding downstream 23644 4800973 ~ 4801530 (+)
G15789 NA non-coding downstream 158042 4935371 ~ 4935990 (+)
G15798 NA non-coding downstream 225841 5003170 ~ 5003390 (+)
G15800 NA non-coding downstream 228493 5005822 ~ 5006037 (+)
CI01000001_03618075_03620436 NA other upstream 1151250 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3101697 1667762 ~ 1671167 (+)
G13051 NA other upstream 3727549 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4280644 483853 ~ 488825 (+)
G12614 NA other upstream 4461760 309144 ~ 310941 (+)
G15794 NA other downstream 283889 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 509420 5279837 ~ 5287698 (+)
G15995 NA other downstream 934556 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2755243 7531541 ~ 7540586 (+)
G17234 NA other downstream 3254795 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location