LOC122323259 (s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199)


Basic Information

Item Value
gene id LOC122323259
gene name s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5176270 ~ 5179677 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU192837
GGAGGATTCAGGACGTCGGCCAAGATGTGACAGAAGCGATGGGACGCTGAGAGCGAGAAGTAAGGAGCACTGCGCGACGGGAACAGCGAAGTCTATCAAGAGCCAGGAAAATAAAAGCGATCACTTCAAATGGCGACGCAGTATTCTGACCTCGAGAAGGCCATTAACACCTTGGTCACAAACTTCCATTCTGCTTCCCCTGATAACCGGCCTCCTCTGAAGGTAGATGAGTTCAAGCATCTCCTCTCCTCCCAGCTGCCATCTTTAGTCAAGTCGGATAATTTTGGAGAAGTGCTGAAGCAAATGGGAGTGAAAGATGGGGAAGGCGTCAGCTTCAAGCACTTTTGGAGCCTGATCCAGAATTTGGCCACAACCCAGCATGGTCTGCTGAGCCACGAGAAGTTGTCCAAATGCACCTGCCTTTTACTATGAGCCGTGGGCTTCAACTGCATCTGCCACTAAGACCTGGTCTCTCTGCATTTATCCAGAACCATTTATCCATCTCCAAACAAAACACTTAACTTTTCTTCCTAAGCATTCCAATAAATAAGCAAACTTTTATAGgcctacttttttattttaaataatgtggcAAGCAGTACAGCCATCATCTCTCATCATAGCAAGCATCAAGTAAATCTTAATGTACAGACCAGTTTACTACTTCATATACCATAACTGGAGTCCAATTGTTTTTCACTTGTCTCTGGATTTACAGCTTCCTGtgcatttaagtgtttttaagtaaattgatgaataaataaaacctttctttttcttgcgATAACACTACATATAAACATACTGCAATAATCGTCTAGCATGTGTATTTCCAGACAAGAGTGGTTTATGcaagcaaaaacaataataacaacactttttatttatattttgtaatactgtttttatggccaaaaatCAATAACTC
>XM_043216954.1
GAGTGGGAGGATTCAGGACGTCGGCCAAGATGTGACAGAAGCGATGGGACGCTGAGAGCGAGAAGTAAGGAGCACTGCGCGACGGGAACAGCGAAGTCTATCAAGAGCCAGGAAAATAAAAGCGATCACTTCAAATGGCGACGCAGTATTCTGACCTCGAGAAGGCCATTAACACCTTGGTCACAAACTTCCATTCTGCTTCCCCTGATAACCGGCCTCCTCTGAAGGTAGATGAGTTCAAGCATCTCCTCTCCTCCCAGCTGCCATCTTTAGTCAAGTCGGATAATTTTGGAGAAGTGCTGAAGCAAATGGGAGTGAAAGATGGGGAAGGCGTCAGCTTCAAGCACTTTTGGAGCCTGATCCAGAATTTGGCCACAACCCAGCATGGTCTGCTGAGCCACGAGAAGTTGTCCAAATGCACCTGCCTTTTACTATGAGCCGTGGGCTTCAACTGCATCTGCCACTAAGACCTGGTCTCTCTGCATTTATCCAGAACCATTTATCCATCTCCAAACAAAACACTTAACTTTTCTTCCTAAGCATTCCAATAAATAAGCAAACTTTTATAGgcctacttttttattttaaataatgtggcAAGCAGTACAGCCATCATCTCTCATCATAGCAAGCATCAAGTAAATCTTAATGTACAGACCAGTTTACTACTTCATATACCATAACTGGAGTCCAATTGTTTTTCACTTGTCTCTGGATTTACAGCTTCCTGtgcatttaagtgtttttaagtaaattgatgaataaataaaacctttctttttcttgcgATAACACTACATATAAACATACTGCAATAATCGTCTAGCATGTGTATTTCCAGACAAGAGTGGTTTATGcaagcaaaaacaataataacaacactttttatttatattttgtaatact

Function

symbol description
s100v2 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. Is expressed in gill; gut; and hematopoietic system. Orthologous to several human genes including S100A14 (S100 calcium binding protein A14).

NR:

description
PREDICTED: protein S100-A14-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192837 True 928 TUCP 0.41 3 5176275 5179677
XM_043216954.1 False 906 mRNA 0.42 3 5176270 5179650

Neighbor

gene id symbol gene type direction distance location
pex11b pex11b,LOC107550082,LOC107563923 coding upstream 146395 5025828 ~ 5029875 (+)
LOC122324057 rit1,LOC107676106,LOC107563922,LOC105906336,LOC107748378,LOC107672884 coding upstream 151137 5014807 ~ 5025133 (+)
LOC122324037 syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084 coding upstream 166161 4990858 ~ 5010109 (+)
LOC122324248 syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084 coding upstream 301896 4855129 ~ 4874374 (+)
eepd1 eepd1,LOC107672840,LOC107698645,LOC107563925,LOC107745036,LOC107550089 coding upstream 367736 4781346 ~ 4808534 (+)
LOC122323251 LOC107550063,LOC107676099,LOC107550192,LOC107672839,LOC107676100 coding downstream 3899 5183576 ~ 5186131 (+)
LOC122324147 NA coding downstream 50735 5230412 ~ 5232089 (+)
sema4ab LOC107705066,LOC107702572,LOC107731578,LOC107550189,LOC107672813,LOC107598230 coding downstream 65674 5245351 ~ 5268208 (+)
si:dkey-81h8.1 LOC107672832,LOC107702549,LOC107550200,LOC107710627 coding downstream 90334 5270011 ~ 5279299 (+)
polr3gla LOC107672826,LOC107724664,LOC107598238,LOC107731563,LOC107702713,LOC107550194,LOC107576745 coding downstream 108490 5288167 ~ 5291798 (+)
LOC122324049 NA non-coding upstream 136494 5031025 ~ 5039776 (+)
G130612 NA non-coding upstream 186517 4850884 ~ 4989753 (+)
G130599 LOC107563917 non-coding upstream 217108 4825444 ~ 4959162 (+)
G130618 NA non-coding upstream 290986 4883274 ~ 4885284 (+)
G130604 NA non-coding upstream 374078 4796956 ~ 4802192 (+)
G130665 NA non-coding downstream 177193 5356870 ~ 5357094 (+)
G130676 NA non-coding downstream 203139 5382816 ~ 5386117 (+)
G130677 NA non-coding downstream 205459 5385136 ~ 5385548 (+)
G130664 NA non-coding downstream 224776 5404453 ~ 5405566 (+)
G130813 LOC107672812,LOC107598225,LOC107571454,LOC107738589,LOC107672867,LOC107731566,LOC107571461 non-coding downstream 323589 5503266 ~ 5505414 (+)
G130637 NA other upstream 12871 5162586 ~ 5163399 (+)
G130614 NA other upstream 189313 4850592 ~ 4986957 (+)
G130613 LOC107745035,LOC100705094,LOC102198470,LOC101485383,LOC107563920,LOC102785635 other upstream 193026 4977885 ~ 4983244 (+)
G130619 si:dkey-222b8.1,LOC105906332,LOC103033551,LOC101072080,LOC107550085,LOC107698642,LOC107748351,LOC104941765 other upstream 202923 4965310 ~ 4973347 (+)
LOC122323731 snapin,LOC107745054,LOC107672825,LOC107563919,LOC107748383,LOC107550075 other upstream 211537 4828418 ~ 4964733 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other downstream 44023 5223700 ~ 5314178 (+)
LOC122324077 NA other downstream 45404 5225081 ~ 5228226 (+)
LOC122324139 LOC107598234,LOC107672810 other downstream 403828 5583505 ~ 5585655 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 566124 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 605453 5785130 ~ 5922973 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G236317 NA unknown CI01000054 null 11564976 ~ 11565121 (+)
rainbow trout (Oncorhynchus mykiss) G234463 NA non-coding NC_048567.1 CM023221.2 21427058 ~ 21427330 (+)
mexican tetra (Astyanax mexicanus) G197432 NA non-coding NC_035919.1 CM008322.1 13611407 ~ 13611641 (-)