LOC122324077


Basic Information

Item Value
gene id LOC122324077
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5225081 ~ 5228226 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU192873
TTCCTCATCACTCCTCCAACCAGGCGAGCAGTATCTGTACCGCTGTTATCACCAATTCAACGGTGCGTGACTCCAGTACGTACTACTGCGCGGCTGTGCAAGGCCGCTTCGCTCACATCGGTAATGGATCCAGAGTCTTTGTGAAAGAACGCACTGTGTTTCCTGTTATTGATATTCTTACTCCGCTGATCACGAACGGCCCTTTGGTCCCTCTCCAGTGTGTTGTGAACGGGGTCGAGGCTTCTGGGGTTCGCGTGTTCTGGAC
>XM_043218272.1
GACTCTACCTTTACCCTGCCTTCATTTCTCACAACCACCGACACCTCAGCCACGACTCTCCCTGTCTCCGTTTCGTCAGTACTAGAGCACAGCTTCCAGAGGCCAGGGATTATTCTTTGATTTCTATACCACGAAATGTCATTAGAAAGCATACACATTTCTCAGGAtctctgtcaaaaacaggtcGGTTTTGTCCCGTCTAATTACTATTCacgagcctctcttctgattggcctggcCAATCGAATTTAACAACGTCACAATTACGTCAGCGCTAGATGGATGGAAAACAAAGGGAAGATGTTGTGATGTTGTAATACAGCCTCAAATAGACTGGACTGAAACGATCGTCAAAAATGCCTgtgtttgcacacttcttatctgaaaaggttcaataaagtattgtctttttgttgttatgTCCAAGTCTAAAGTTGTAGTTTCTTTGTGACTATGTCGTTTATTAAATAacgtctgtgtgcatgtgtgtaaaacaacaaactgacagtttatatactgcatatacACCATATATAAATCATGACCAGATCGACATGCGCTCTGTCAGATCGTTGTACAGTTCGGCTGACCTggtttttctgttaaaataaaccttttcgATATGTTTCCGTGTTGTTGTTGCTCTGTGGCCATAGGTTTAAATGCGCAGTATGTGTTTTCTGTAGTCAGGCGACTGAGAGGAAGACCGGGGTTTTGCTGAAGTAGTCAAATGAAGGCTAGATTCTGTCGTGATCGTCAGACTTTAAAGATGAGCGTCTGGCTGGTTATGATCTGGGTGTCTCACACTGTGGGAACAGCAAACAAGGCGTTCATTGTAACACAGTGGCCGACGGTGGCTGAGGTGATGGCTGGAGAAGAAGTGGTTTTAAAGTGCAACATTGTAGAGCTGTACGCCCCGTGTTCGACGGTGGCTTGGCTGAGAGTCGTTCCCGGGAACGCAACGATCAGCCTGACCGACAGACTTCAGATCGTTCCTCATCACTCCTCCAACCAGGCGAGCAGTATCTGTACCGCTGTTATCACCAATTCAACGGTGCGTGACTCCAGTACGTACTACTGCGCGGCTGTGCAAGGCCGCTTCGCTCACATCGGTAATGGATCCAGAGTCTTTGTGAAAGAACGCACTGTGTTTCCTGTTATTGATATTCTTACTCCGCTGATCACGAACGGCCCTTTGGTCCCTCTCCAGTGTGTTGTGAACGGGGTCGAGGCTTCTGGGGTTCGCGTGTTCTGGACCGTGGaggggagaaaagaaaaaggacaaCCAGTTTTGACGCATGGGAACGATGGTGCTATCCGGACCTTTAGGAACCAGATCCTGGTTACCGCCGAGGAGTGGGAAAGGAaggctcagtgtgtgtgtgtagtggaGTTTGGAGGACAGCTCTATACCAAGACCCTTCAGCCACATGATGCAACAGATGCGTgttatgctttaaaatacatatatctGTTTGTCTGCTTCGTTTTTGGCCTTCTGCTTCTGGTGACAGTGATTGTTTATAGACTGAGATGGAAAACCTTTGTTATATGATatgtgtatgaaaaaaaaaaaaaacagttttatgttaatgtttatgttaatgttttttcgGTGATTCATGTTTTGAATATCATTGTTTATTTTGGTAATCGAAAGGATGTATTTAATCCAATATGTTCTGAACATTAAAAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU192873 False 265 lncRNA 0.53 2 5226723 5227613
XM_043218272.1 True 1696 mRNA 0.44 5 5225081 5228226

Neighbor

gene id symbol gene type direction distance location
LOC122323251 LOC107550063,LOC107676099,LOC107550192,LOC107672839,LOC107676100 coding upstream 38950 5183576 ~ 5186131 (+)
pex11b pex11b,LOC107550082,LOC107563923 coding upstream 195206 5025828 ~ 5029875 (+)
LOC122324057 rit1,LOC107676106,LOC107563922,LOC105906336,LOC107748378,LOC107672884 coding upstream 199948 5014807 ~ 5025133 (+)
LOC122324037 syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084 coding upstream 214972 4990858 ~ 5010109 (+)
LOC122324248 syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084 coding upstream 350707 4855129 ~ 4874374 (+)
LOC122324147 NA coding downstream 2186 5230412 ~ 5232089 (+)
sema4ab LOC107705066,LOC107702572,LOC107731578,LOC107550189,LOC107672813,LOC107598230 coding downstream 17125 5245351 ~ 5268208 (+)
si:dkey-81h8.1 LOC107672832,LOC107702549,LOC107550200,LOC107710627 coding downstream 41785 5270011 ~ 5279299 (+)
polr3gla LOC107672826,LOC107724664,LOC107598238,LOC107731563,LOC107702713,LOC107550194,LOC107576745 coding downstream 59941 5288167 ~ 5291798 (+)
mtx1b mtx1,mtx1b,LOC107672823,LOC107550195,LOC107598218,LOC103026555,LOC105901471,LOC108410892 coding downstream 88692 5316918 ~ 5329000 (+)
G130622 NA non-coding upstream 5000 5048394 ~ 5220081 (+)
LOC122324049 NA non-coding upstream 185305 5031025 ~ 5039776 (+)
G130612 NA non-coding upstream 235328 4850884 ~ 4989753 (+)
G130599 LOC107563917 non-coding upstream 265919 4825444 ~ 4959162 (+)
G130665 NA non-coding downstream 128644 5356870 ~ 5357094 (+)
G130676 NA non-coding downstream 154590 5382816 ~ 5386117 (+)
G130677 NA non-coding downstream 156910 5385136 ~ 5385548 (+)
G130664 NA non-coding downstream 176227 5404453 ~ 5405566 (+)
G130813 LOC107672812,LOC107598225,LOC107571454,LOC107738589,LOC107672867,LOC107731566,LOC107571461 non-coding downstream 275040 5503266 ~ 5505414 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 45404 5176270 ~ 5179677 (+)
G130637 NA other upstream 61682 5162586 ~ 5163399 (+)
G130613 LOC107745035,LOC100705094,LOC102198470,LOC101485383,LOC107563920,LOC102785635 other upstream 241837 4977885 ~ 4983244 (+)
G130619 si:dkey-222b8.1,LOC105906332,LOC103033551,LOC101072080,LOC107550085,LOC107698642,LOC107748351,LOC104941765 other upstream 251734 4965310 ~ 4973347 (+)
G130609 snapin,LOC107745054,LOC107563919,LOC107672825,LOC107748383 other upstream 262381 4960913 ~ 4962700 (+)
LOC122324139 LOC107598234,LOC107672810 other downstream 355279 5583505 ~ 5585655 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 517575 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 556904 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 1143609 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 1234857 6463083 ~ 6488760 (+)

Expression


Co-expression Network