CI01000001_04914279_04922772 (RND1B, RND1, RND1A)


Basic Information

Item Value
gene id CI01000001_04914279_04922772
gene name RND1B, RND1, RND1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4914150 ~ 4923679 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04914279_04922772.mRNA
GTATAAATTGCCGCAGTGCCGTATTTCTCGCTTTCGTGGTGATTTAGTCCAAACCCCAATGCGGTCTGAACAAACTGCCCAGGGCCGTCATACGAGAGAGCCATCGCGCACAGGACCGTCTTATTTACAATGAAGGAGAGAAGAATCAGCCAGCCTTTGGTAATGCGTTGTAAACTGGTTTTAGTAGGAGACGTGCAGTGCGGGAAAACTGCGATGTTGCAAGTCTTGGCCAAAGACTGTTATCCTGAGACATACGTCCCAACAGTGTTTGAAAACTACACAGCTGGACTGGAATTAGAGGAGCAGCGCGTGGAGCTTAGTTTATGGGACACGTCAGGTTCACCGTATTATGATAATGTCAGGCCTCTCTGCTACAGTGACGCAGACGCTGTTCTGCTCTGCTTCGATATAAGTCGCCCTGACACCGTCGAAAGCTCTCTGAAAAAGTGGAAAGCCGAAATCATGGATTTCTGCCCCAGTACTCGAATAATCCTAGTCGGCTGCAAGACAGACCTGCGTACAGATGTTTGCACACTGATGGAGCTGTCCAATCAGAGACTGACTCCCATCTCCCATGAGCAGGGCACCTTGTTGGCGAAGCAGGTAGGAGCGGAGGTGTACCTGGAGTGCTCTGCGTTCACATCGGAGAAGAGCATTCACAGCGTGTTCCGCTCAGCGGCACTCACATGCCTCAACAAACTACAGCCCCCCATAAAGCAAAGCCCCACCCGCCGGCTCTCTAAACGCCTCCTTCACCTGCCCAGCAAGGCAGAGCTCCTGACCTCCTCCTTCAGCAAGGAGAGAACCAAGAGCTGTTGCATCATGTGAGCCCCACGTGCGCCACTCCAGCTCCAGAAAACGCATTTTCGCTCTTCGAGAGGGTTGGTTGGGGGGGGTTTGAGAGAAGGGGAGGTCATGACCTTTCATGACCCCTCCCTCTCTATACACTTAAGTTGTTCTTCTTCCATTCTGACACCCCACCTGCAAACACACTCATCCCTACGACAAAGAGCTGTTGCCATTGTTCAAGGTTTTTGGCTGTTACACATCCTAATGCTAAAGTATCGATTGATTTCCCTTTACATGAACTGCATTTTGTATTAATGATCAATCAATCAGACAAAGAAGGAAACACAGTGTATATTGGACACTGTTGAATATTTTTGTGGGTAGTCTTATTTGTTAGTGTGCACACATGTATGGGAATGTGGGTTGAGCTGTGAACGTAATTTGATATTTAAGGGAAGAGGATGTGTTTCTGTTACACAGTACGCACTTTAGTGAACATGGATGTGATTGTTGATTGGAAAGTGAGAGGATGATTTGGCATAAGTTGCTGTTTCAAAACAGAATTATGCATTGCTTGTACTTGCTAAAGTCTTTGGCACTGAACTACGAAGAATCAAAATATCACGCCGTTTTGTTAGAAGCGTGAGGGGAGGAGCCAAACAAGATTTTATGTCCTCCTGAAAAAGGAGACAGTGTTATAAATCTGCTAGATGAAGCATCCAATCACATTTGTACAATCCAGATGTATTGGACATGCTGACACACTCTTTCACTCTCTCTCTCATCCCTACTGTAGTCCTTCATGTGCTTTCTGCCTCTTGAGAATGGGTCATAAATCTCAATCAATGAAGAGAAGCCCAGCATTGCCTGGGCCATTTCTCTGTATAGAGCAGGAGTTATTGCCACAAAGACCCTTCCAGATGTTCCAGGCATTCTTTTTTAGAAA

Function

symbol description
rnd1a Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in nervous system; optic vesicle; otic vesicle; and polster. Orthologous to human RND1 (Rho family GTPase 1).
rnd1b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in several structures, including blastomere; germ ring; margin; optic primordium; and presumptive mesoderm. Orthologous to human RND1 (Rho family GTPase 1).
rnd1 Enables signaling receptor binding activity. Involved in actin filament organization; negative regulation of cell adhesion; and neuron remodeling. Located in several cellular components, including actin cytoskeleton; adherens junction; and plasma membrane.

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K07531 RND1; Rho family GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04914279_04922772.mRNA True 1735 mRNA 0.47 5 4914150 4923679

Neighbor

gene id symbol gene type direction distance location
CI01000001_04901365_04901652 NA coding upstream 11583 4901275 ~ 4902567 (+)
CI01000001_04779079_04792659 SLC17A9B, SLC17A9 coding upstream 121323 4778937 ~ 4792827 (+)
CI01000001_04773238_04776581 MGC83062, GID8, GID8.L, CT011, GID8A, GID8B coding upstream 136821 4772701 ~ 4777329 (+)
CI01000001_04723418_04724292 NA coding upstream 189792 4723354 ~ 4725671 (+)
CI01000001_04701645_04713999 NA coding upstream 199997 4701645 ~ 4714153 (+)
CI01000001_04936808_04943256 PRIM1 coding downstream 13129 4936808 ~ 4943455 (+)
CI01000001_04950531_04960550 NACA, NACA.2 coding downstream 26852 4950531 ~ 4960695 (+)
CI01000001_04962494_04971921 NA coding downstream 38815 4962494 ~ 4972231 (+)
CI01000001_04976994_04988795 NFASCB coding downstream 52668 4976347 ~ 4989082 (+)
CI01000001_04993860_04998535 NA coding downstream 70181 4993860 ~ 4998761 (+)
G15419 NA non-coding upstream 112620 4800973 ~ 4801530 (+)
G15416 NA non-coding upstream 116356 4797476 ~ 4797794 (+)
G15395 NA non-coding upstream 155731 4753717 ~ 4758419 (+)
G15389 NA non-coding upstream 187410 4598677 ~ 4726740 (+)
G15789 NA non-coding downstream 11692 4935371 ~ 4935990 (+)
G15798 NA non-coding downstream 79491 5003170 ~ 5003390 (+)
G15800 NA non-coding downstream 82143 5005822 ~ 5006037 (+)
G15812 NA non-coding downstream 117687 5041366 ~ 5041565 (+)
G15817 NA non-coding downstream 137128 5060807 ~ 5061182 (+)
CI01000001_03618075_03620436 NA other upstream 1292699 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3243146 1667762 ~ 1671167 (+)
G13051 NA other upstream 3868998 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4422093 483853 ~ 488825 (+)
G12614 NA other upstream 4603209 309144 ~ 310941 (+)
G15794 NA other downstream 137539 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 363070 5279837 ~ 5287698 (+)
G15995 NA other downstream 788206 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2608893 7531541 ~ 7540586 (+)
G17234 NA other downstream 3108445 8032124 ~ 8032483 (+)

Expression


Co-expression Network