G130833


Basic Information

Item Value
gene id G130833
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5548507 ~ 5548799 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU193185
ggacaaaaaaaaatgaaccaaaTGGAGGAAGACTGGAGAATTGTGCtgtgacttatttaaaaaagaaccCTGAATTAATCGGGTGGCTTGATGTTGATTGCAGTCTTTCTCATCAATGTATGTGTGAGACGAGTATATGGCGCTAAGAACAGCACACACATTTCTGTTATGTTTTAGCTAATGATAATAACCCTGTTTCAGCCCTGATAAAACACATCTTAACCAGCACACCAAGGTCTTCAGGATAGTGACCCTGCAGGAGCAGAACCGAACATTTCTGATCTACAAGTTAT

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0198738 cell-cell signaling by wnt biological_process
GO:1905114 cell surface receptor signaling pathway involved in cell-cell signaling biological_process
GO:0048699 generation of neurons biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0016055 Wnt signaling pathway biological_process

KEGG:

id description
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU193185 True 293 lncRNA 0.40 1 5548507 5548799

Neighbor

gene id symbol gene type direction distance location
LOC122324215 NA coding upstream 15620 5531960 ~ 5532887 (+)
eya3 eya3,LOC107738590,LOC107731567,LOC107672865,LOC107702484 coding upstream 47911 5484922 ~ 5500596 (+)
si:ch211-195b13.1 si:ch211-195b13.1,LOC107738591,LOC107672866,LOC107702504,LOC107731568,LOC103036792,LOC108411161 coding upstream 64839 5471782 ~ 5483668 (+)
LOC122323295 NA coding upstream 123719 5407049 ~ 5424788 (+)
si:dkeyp-92c9.2 si:dkeyp-92c9.2,LOC107598237,LOC107571465,LOC107738595,LOC107731579,LOC107672824,LOC107702702 coding upstream 195247 5344211 ~ 5353260 (+)
LOC122323836 LOC107598234 coding downstream 20931 5569730 ~ 5571271 (+)
LOC122323266 NA coding downstream 64269 5613068 ~ 5614130 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding downstream 167897 5716696 ~ 5717681 (+)
col28a1a col28a1,LOC107754784 coding downstream 176569 5725368 ~ 5739185 (+)
LOC122323385 sdhaf3,LOC107702681 coding downstream 327251 5876050 ~ 5882974 (+)
G130813 LOC107672812,LOC107598225,LOC107571454,LOC107738589,LOC107672867,LOC107731566,LOC107571461 non-coding upstream 43093 5503266 ~ 5505414 (+)
G130664 NA non-coding upstream 142941 5404453 ~ 5405566 (+)
G130676 NA non-coding upstream 162390 5382816 ~ 5386117 (+)
G130677 NA non-coding upstream 162959 5385136 ~ 5385548 (+)
G130665 NA non-coding upstream 191413 5356870 ~ 5357094 (+)
G130835 NA non-coding downstream 16581 5565380 ~ 5587515 (+)
LOC122324017 NA non-coding downstream 62189 5610988 ~ 5612338 (+)
G130855 NA non-coding downstream 65465 5614264 ~ 5632428 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding downstream 110734 5659533 ~ 5670532 (+)
G130861 NA non-coding downstream 125496 5674295 ~ 5674844 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 234329 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 320281 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 368830 5176270 ~ 5179677 (+)
G130637 NA other upstream 385108 5162586 ~ 5163399 (+)
G130613 LOC107745035,LOC100705094,LOC102198470,LOC101485383,LOC107563920,LOC102785635 other upstream 565263 4977885 ~ 4983244 (+)
LOC122324139 LOC107598234,LOC107672810 other downstream 34706 5583505 ~ 5585655 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 197002 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 236331 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 823036 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 914284 6463083 ~ 6488760 (+)

Expression


Co-expression Network