G130835


Basic Information

Item Value
gene id G130835
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5565380 ~ 5587515 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU193190
ttttttttttttttTTTATTCATGATTGCAACAGCCTTTATTTGTATTATGCAGCTGGAGGTGTGTTCttaaaaaacagagaaaaacaactttaaaccACAGTCGCGTCTCATAATTCATTCACAtagggcctttttttttttatttcaccatCTTATCTCTGATGACCCGAATGGACAAATATCGCAGACAGATAGCCTCCAGGTCACCCCGCGGTCCTTACACGTTAAAATCATTTCAGCAAACACAAGGTTTGAGTTTAAGCACATAAACACGCATAACAAGCATTTCCTTTGTTAAATTCCTCAGACTTCACGTAGAAACCGTTTAGTATCTGGCACTCACCCGAATAGAAATATCTTTCACGTGAGCCCTTAGTTAGCCCGATTTAACCGTCTTTTGCTCACACGACATAAAAGCATCATGGAAAAGGTCACCAGTAAAAAGATTTGTGCTGAAAACCGAACCTGTTAAAGGAACCGCAGTCGTCTAAAAATCGCACTCCCGGCCGAGCAGAGCAGGAAAGCGgtagaaagaaaagagagtgaAAAAGAGCACACATTTTGTCCATGATTCACATTATCACACCGTCTGGCTCTTTCAGACAATCACGATCATTTGAGGCAAGATTAGGGTTTTCGGTCCTGGTGcaagggtcaaaggtcagaggtcaccttCGCCATATCTAGCAGTTCCGCAAGTCTCAGAAAAGCCATGGCAGTATCCGCACCACAGTCCGAGTGAGGAGGACTTTAGGCACCGGTGGGGTTTTCATCCAGACCGAATCAGTTCGTATGTTAATAGCAAATCAGCAAAGTGCATCAGTTGTGGCCCAGTCCGTCAGGTTCAGCTCGGTTCAGAACAGCAGGGTGAGGGTGCAGTCACATGATGCAGCACTTGTTCTTGAAAATGTGCGGGTGCTTGTAGCGCAGTCTCTGTTTGGGCCGGTATTTCTCTAGATACGTCAGCTGCTTGCTGTTTATTGCACCCCTGCGCT

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00620 Pyruvate metabolism
ko00190 Oxidative phosphorylation
ko00710 Carbon fixation in photosynthetic organisms
ko05012 Parkinson disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU193190 True 997 lncRNA 0.44 2 5565380 5587515

Neighbor

gene id symbol gene type direction distance location
LOC122324215 NA coding upstream 32493 5531960 ~ 5532887 (+)
eya3 eya3,LOC107738590,LOC107731567,LOC107672865,LOC107702484 coding upstream 64784 5484922 ~ 5500596 (+)
si:ch211-195b13.1 si:ch211-195b13.1,LOC107738591,LOC107672866,LOC107702504,LOC107731568,LOC103036792,LOC108411161 coding upstream 81712 5471782 ~ 5483668 (+)
LOC122323295 NA coding upstream 140592 5407049 ~ 5424788 (+)
si:dkeyp-92c9.2 si:dkeyp-92c9.2,LOC107598237,LOC107571465,LOC107738595,LOC107731579,LOC107672824,LOC107702702 coding upstream 212120 5344211 ~ 5353260 (+)
LOC122323266 NA coding downstream 25553 5613068 ~ 5614130 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding downstream 129181 5716696 ~ 5717681 (+)
col28a1a col28a1,LOC107754784 coding downstream 137853 5725368 ~ 5739185 (+)
LOC122323385 sdhaf3,LOC107702681 coding downstream 288535 5876050 ~ 5882974 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 474034 6061549 ~ 6162543 (+)
G130833 NA non-coding upstream 16581 5548507 ~ 5548799 (+)
G130813 LOC107672812,LOC107598225,LOC107571454,LOC107738589,LOC107672867,LOC107731566,LOC107571461 non-coding upstream 59966 5503266 ~ 5505414 (+)
G130664 NA non-coding upstream 159814 5404453 ~ 5405566 (+)
G130676 NA non-coding upstream 179263 5382816 ~ 5386117 (+)
G130677 NA non-coding upstream 179832 5385136 ~ 5385548 (+)
LOC122324017 NA non-coding downstream 23473 5610988 ~ 5612338 (+)
G130855 NA non-coding downstream 26749 5614264 ~ 5632428 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding downstream 72018 5659533 ~ 5670532 (+)
G130861 NA non-coding downstream 86780 5674295 ~ 5674844 (+)
G130890 LOC107731557,LOC107702657,LOC107568288 non-coding downstream 201051 5788566 ~ 5924971 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 251202 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 337154 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 385703 5176270 ~ 5179677 (+)
G130637 NA other upstream 401981 5162586 ~ 5163399 (+)
G130613 LOC107745035,LOC100705094,LOC102198470,LOC101485383,LOC107563920,LOC102785635 other upstream 582136 4977885 ~ 4983244 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 158286 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 197615 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 784320 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 875568 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 932405 6519920 ~ 6526080 (+)

Expression


Co-expression Network