LOC122324017


Basic Information

Item Value
gene id LOC122324017
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5610988 ~ 5612338 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU193218
GCCGGATCACTGTTGAAAACCAATTAGCCTTAAGCTAAGCACAAGGAGCTAAGTGTCGTAATAATTGAAACCGTTGACAATCTCGTTAGCGTTTAAGTAGCTAGCTAATTAATTAGCACGCTAGCATGTGCTTTCGGGTCTCAtgactgaaaccacaggactgCTCGGCATTTATAGTTTGATCCAGACTGAATCAAATTATTCGCCCAGAGAGAGCTCTTGTATTTCTATGCTATTGCCAGCTAATTTTCCTCGTTTAAACCTCGAGTTTAGAGAAACGCGCGGACCTCTTGCTTATtcatattacaattattacacGCAGTtccaataattatttaattcaatgtatttatacaattaattttttggtGTACTTAACAGTTGCTtaacaacatttacattcagGCCTATTTGTATTCTGATACATGTATGAGTTTATTCTTGCGATCTTTAAAGTCGTGTCAAACTTGTAAACGTTACAGTGTTTATGTGAATTGTTTCCAGCATTTTCTACgCAGAGCGGCCGACCGGAGCCGCGGGGAAACAGCGCCCCCCTGAGGAGCAGACACTACACGCCCGGACACGGGGAAGAGATGGGGCTTGTTCACGCTCCTCTTTGCCTACTTACAGTTTTGTCCAAACGAATGAAGCCTGCGGTCGCTGCAGTGGATCCTCCGAGAAGATGCACTCAGTCTCTGAACCGTCCTACAGCTCCTGAGAGCATCAGGCCATTCAATCCAGCTGTGACCCGGACCTGCATGTAAACTGCACTTAAAACACTTCACATTTTAAGACTAATAACATCTTAGTCACGCACTGTCAAATGTTTGCCATCTTTTTTGCCGAATAAAGTGATGCAGTGTGTTTTCTGAACATCTCGTGGGCATCTTTTGGGAAATATCCAGCACGGTCAGCTTGATGAATGTCATTTAAAGTAGGACGTGCGTGTGGACTAAATGTCCTTGTATAGGTCCCACAACGGTTCAGATTTATCCCTAATATTCTTAAGTAAAACAGGTTATTAAATAGAACCACAGAATGTAAGAACCAATCAGATGTGAGAAAATCTGCGAGCTCTTGTTGAACTCACAGTTTTGTTCCAGATTGAGTCATACGGTTCATTTCTGTGTTAAACACAgtgaaaagtgcattttattgctCTGTGGTTGAGCCACAGCTTGTACAAAGGTTATATATGAGGATGACATACACGTTTTGGAACAGGGAAAAATGCCGTGTGAAAACAC
>XR_006247088.1
CATGTGCTTTCGGGTCTCAtgactgaaaccacaggactgCTCGGCATTTATAGTTTGATCCAGACTGAATCAAATTATTCGCCCAGAGAGAGCTCTTGTATTTCTATGCTATTGCCAGCTAATTTTCCTCGTTTAAACCTCGAGTTTAGAGAAACGCGCGGACCTCTTGCTTATtcatattacaattattacacGCAGTtccaataattatttaattcaatgtatttatacaattaattttttggtGTACTTAACAGTTGCTtaacaacatttacattcagGCCTATTTGTATTCTGATACATGTATGAGTTTATTCTTGCGATCTTTAAAGTCGTGTCAAACTTGTAAACGTTACAGTGTTTATGTGAATTGTTTCCAGCATTTTCTACgCAGAGCGGCCGACCGGAGCCGCGGGGAAACAGCGCCCCCCTGAGGAGCAGACACTACACGCCCGGACACGGGGAAGAGATGGGGCTTGTTCACGCTCCTCTTTGCCTACTTACAGTTTTGTCCAAACGAATGAAGCCTGCGGTCGCTGCAGTGGATCCTCCGAGAAGATGCACTCAGTCTCTGAACCGTCCTACAGCTCCTGAGAGCATCAGGCCATTCAATCCAGCTGTGACCCGGACCTGCATGTAAACTGCACTTAAAACACTTCACATTTTAAGACTAATAACATCTTAGTCACGCACTGTCAAATGTTTGCCATCTTTTTTGCCGAATAAAGTGATGCAGTGTGTTTTCTGAA

Function

GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0045137 development of primary sexual characteristics biological_process
GO:0007548 sex differentiation biological_process
GO:0061458 reproductive system development biological_process
GO:0048608 reproductive structure development biological_process
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193218 True 1247 lncRNA 0.42 2 5610988 5612338
XR_006247088.1 False 749 lncRNA 0.43 2 5611112 5611964

Neighbor

gene id symbol gene type direction distance location
LOC122323836 LOC107598234 coding upstream 39717 5569730 ~ 5571271 (+)
LOC122324215 NA coding upstream 78101 5531960 ~ 5532887 (+)
eya3 eya3,LOC107738590,LOC107731567,LOC107672865,LOC107702484 coding upstream 110392 5484922 ~ 5500596 (+)
si:ch211-195b13.1 si:ch211-195b13.1,LOC107738591,LOC107672866,LOC107702504,LOC107731568,LOC103036792,LOC108411161 coding upstream 127320 5471782 ~ 5483668 (+)
LOC122323295 NA coding upstream 186200 5407049 ~ 5424788 (+)
LOC122323266 NA coding downstream 730 5613068 ~ 5614130 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding downstream 104358 5716696 ~ 5717681 (+)
col28a1a col28a1,LOC107754784 coding downstream 113030 5725368 ~ 5739185 (+)
LOC122323385 sdhaf3,LOC107702681 coding downstream 263712 5876050 ~ 5882974 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 449211 6061549 ~ 6162543 (+)
G130835 NA non-coding upstream 23473 5565380 ~ 5587515 (+)
G130833 NA non-coding upstream 62189 5548507 ~ 5548799 (+)
G130813 LOC107672812,LOC107598225,LOC107571454,LOC107738589,LOC107672867,LOC107731566,LOC107571461 non-coding upstream 105574 5503266 ~ 5505414 (+)
G130664 NA non-coding upstream 205422 5404453 ~ 5405566 (+)
G130676 NA non-coding upstream 224871 5382816 ~ 5386117 (+)
G130855 NA non-coding downstream 1926 5614264 ~ 5632428 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding downstream 47195 5659533 ~ 5670532 (+)
G130861 NA non-coding downstream 61957 5674295 ~ 5674844 (+)
G130890 LOC107731557,LOC107702657,LOC107568288 non-coding downstream 176228 5788566 ~ 5924971 (+)
G130899 NA non-coding downstream 186173 5798511 ~ 5934717 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 25333 5583505 ~ 5585655 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 296810 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 382762 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 431311 5176270 ~ 5179677 (+)
G130637 NA other upstream 447589 5162586 ~ 5163399 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 133463 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 172792 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 759497 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 850745 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 907582 6519920 ~ 6526080 (+)

Expression


Co-expression Network