CI01000001_04936808_04943256 (PRIM1)


Basic Information

Item Value
gene id CI01000001_04936808_04943256
gene name PRIM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4936808 ~ 4943455 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04936808_04943256.mRNA
GATGCTTTGGACAGGCCCTTCATTTACAGGCACCAGAAAAAGGCCTGGGATAATATTCCTGTTGACGGCATGGTGAAAAATAATAGGCTACCTACAGGCATCATATTTACACATTTATATACCTTCACCTGTTTACTGCGACTATTCCCGTTTCCACAGTACTATCGCTGGTTAAGTTATGGCGGTGTGTCTAAAAACTACTTCCAAAACCGTGAATTTTCCTTCACGCTAAAAGATGACATTTATGTCAGATATCAGTCCTTCAGCACTCAGAATGAGCTGGAGAAAGAGATGCAGAAAATGGTTCCTTACAAGATTGATATTGGAGCAGTCTACAGCCATAGGCCCAGTCAACACAATGCTGTGAAGTCTGGAACCTTCCAGGCCCTGGAGAAGGAGCTGGTGTTTGACATTGACATGACAGACTATGACGATGTCAGACGTTGCTGCAGTGCTGCTGATATCTGCTCAAAGTGCTGGACTCTAATGACCATCGCTATCCGTATTCTGGACCGGGCACTTCGGGAGGACTTTGGATTCCATCATCTCCTGTGGGTGTATTCGGGTAGGAGAGGAGTGCATTGCTGGGTTTGTGATGAAGCTGCTAGGAAGCTCTCAGTGGCGGCACGGTCTGCTGTGGCAGAGTATCTCAGTTTAGTCAAGGGTGGTGAGGAGACCACGAGAAAAGTTGTGCTGTCAGATCCAATCCATCCTTTCATCAATCATTCTCTGTCTGTGGTGGAGCACTATTTCCCACAGTACGCCATTGTGGAACAGGACATATTAGGCAGTAAAGAGAGTTTAGACAAAGTTTTGATTGGTGTAACTGATTTTTATGAGAGGAGCCCAGTTGTTTCTTTAAGTCTGACTGCACATATCAAAAAAGACCTGGCAACCTATTGTCAGAAGGTGAAAAACCCAATGGAGCGATGGGGCGAACTCTGCTCTCTGGTTGAACATAAAAAGTCGAGTACTAAGAAGGGTGGTCAGTACTTCGATAAGGAGATTATGTTGCAGTACTGTTACCCTCGCCTGGATGTCAACGTCAGTAAAGGAGTCAACCATTTACTGAAGAGCCCCTTCAGCGTACACCCCAAGACGGGTCGAATCTCAGTGCCAATAGATTTGAAAGAACTGAACACGTTTGATCCTTTTGACGTTCCTACGATCAGTTTGATCTGTGAGGAGCTGGAGAAACCCAGAGCAGATGAGGTGGAGGACGAGGATATGAAGGACAAGGAGAATGAACAAGATGCTGGAGAACGACGCAGAATCAGAGATTACAAGCGCACCAGCCTGGCCAAGTATGTGAAGGTGTTTGATCGTTTTTTGGAGGCAATGGCTCGATCTCGGAAAGGAGAGATGCTGAAGAAGAGTGATCTTCAGAAGGACTTCTGAGACAGAAGAGCTGGAACATTACAGCTAATTTTCAGGTTTTCATAATGCATAACTGCTGACCATCTGTTTGTAAAGATACAGACACTTTTGACATACAAAAAACTACAGTTTTGCTTTCAAACATTCCATTGGAGGATCGGTCAAGTTATGAAATAATGTCATTTATTTCCACATGATACTGTGTTCCTTTACTTTTCTA

Function

symbol description
prim1 Predicted to enable DNA primase activity. Predicted to be involved in DNA replication, synthesis of RNA primer. Predicted to act upstream of or within DNA replication. Predicted to be part of alpha DNA polymerase:primase complex. Is expressed in several structures, including blastodisc; head; hematopoietic system; nervous system; and pectoral fin musculature. Orthologous to human PRIM1 (DNA primase subunit 1).

NR:

description
Primase polypeptide 1

GO:

id name namespace
GO:0008905 mannose-phosphate guanylyltransferase activity molecular_function

KEGG:

id description
K02684 PRI1; DNA primase small subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04936808_04943256.mRNA True 1597 mRNA 0.44 14 4936808 4943455

Neighbor

gene id symbol gene type direction distance location
CI01000001_04914279_04922772 RND1B, RND1, RND1A coding upstream 13129 4914150 ~ 4923679 (+)
CI01000001_04901365_04901652 NA coding upstream 34241 4901275 ~ 4902567 (+)
CI01000001_04779079_04792659 SLC17A9B, SLC17A9 coding upstream 143981 4778937 ~ 4792827 (+)
CI01000001_04773238_04776581 MGC83062, GID8, GID8.L, CT011, GID8A, GID8B coding upstream 159479 4772701 ~ 4777329 (+)
CI01000001_04723418_04724292 NA coding upstream 212450 4723354 ~ 4725671 (+)
CI01000001_04950531_04960550 NACA, NACA.2 coding downstream 7076 4950531 ~ 4960695 (+)
CI01000001_04962494_04971921 NA coding downstream 19039 4962494 ~ 4972231 (+)
CI01000001_04976994_04988795 NFASCB coding downstream 32892 4976347 ~ 4989082 (+)
CI01000001_04993860_04998535 NA coding downstream 50405 4993860 ~ 4998761 (+)
CI01000001_05051664_05059659 MFSD4B coding downstream 108074 5051529 ~ 5059940 (+)
G15789 NA non-coding upstream 818 4935371 ~ 4935990 (+)
G15419 NA non-coding upstream 135278 4800973 ~ 4801530 (+)
G15416 NA non-coding upstream 139014 4797476 ~ 4797794 (+)
G15395 NA non-coding upstream 178389 4753717 ~ 4758419 (+)
G15389 NA non-coding upstream 210068 4598677 ~ 4726740 (+)
G15798 NA non-coding downstream 59715 5003170 ~ 5003390 (+)
G15800 NA non-coding downstream 62367 5005822 ~ 5006037 (+)
G15812 NA non-coding downstream 97911 5041366 ~ 5041565 (+)
G15817 NA non-coding downstream 117352 5060807 ~ 5061182 (+)
G15796 NA non-coding downstream 127017 5074401 ~ 5074805 (+)
CI01000001_03618075_03620436 NA other upstream 1315357 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3265804 1667762 ~ 1671167 (+)
G13051 NA other upstream 3891656 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4444751 483853 ~ 488825 (+)
G12614 NA other upstream 4625867 309144 ~ 310941 (+)
G15794 NA other downstream 117763 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 343294 5279837 ~ 5287698 (+)
G15995 NA other downstream 768430 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2589117 7531541 ~ 7540586 (+)
G17234 NA other downstream 3088669 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021586 prim1 coding NC_007134.7 CM002907.2 17839187 ~ 17848907 (+)