G130890 (LOC107731557,LOC107702657,LOC107568288)


Basic Information

Item Value
gene id G130890
gene name LOC107731557,LOC107702657,LOC107568288
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5788566 ~ 5924971 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU193265
TTTTGGGATTTGGAGAGGGCTTCTTTAAAACTAGCGATCCCCAACCTTTGAGCGGCACTGTATATATTCCCTTACTAATGTGACAGGATAACTGAATATGGAGTCTACTTCAAACTAAGAagctttctgtgtttttgactTGAACTTACATCATATTAGGTCACCATAGCTTGACTGTTGTGACaatttgtctgtttttacaAGAAACAATTactgtgcaatttattttaaccaACAAGCCACGCTAGCCTACTCCTGTTTTGGttagagaaaagaaaagctctatttctatattttagaAACCTATAACCTGATAAGAGGATACAGTAACACGGCAACCTCGAAAAATACCTCGAATATAAATTCTATTTGGAAAAAACCCCTAAAAGATAGTCTAGTAAAGGGAACAGAGaaaataaggcaaaaaaaaaaaaaaaaaagcatttaaataatggCAACATTGTAGTTGTGTGGTCTGAGGCTTGATGGGATTACTGGTCTTTATCGGGCTTGTAGATGGACAGGGTTCTGGCCGAGGGGTCTGTGGCCTTGATCCAGCGGGGCATCCAGTAATGTGGGGTCCACTCACAGCGGCCGGGGTAATGCTTCTCAAAGATCGTCCTTATGAAGAAGCCCTCTTTGGTTGTGGGAGGATTGAAAGGGAACTTCTCACTGGCTTTCTCCAGCTGACAGTCGTTC
>TU193266
TTTTGGGATTTGGAGAGGGCTTCTTTAAAACTAGCGATCCCCAACCTTTGAGCGGCACTGTATATATTCCCTTACTAATGTGACAGGATAACTGAATATGGAGTCTACTTCAAACTAAGAagctttctgtgtttttgactTGAACTTACATCATATTAGGTCACCATAGCTTGACTGTTGTGACaatttgtctgtttttacaAGAAACAATTactgtgcaatttattttaaccaACAAGCCACGCTAGCCTACTCCTGTTTTGGttagagaaaagaaaagctctatttctatattttagaAACCTATAACCTGATAAGAGGATACAGTAACACGGCAACCTCGAAAAATACCTCGAATATAAATTCTATTTGGAAAAAACCCCTAAAAGATAGTCTAGTAAAGGGAACAGAGaaaataaggcaaaaaaaaaaaaaaaaagcatttaaataatggCAACATTGTAGTTGTGTGGTCTGAGGCTTGATGGGATTACTGGTCTTTATCGGGCTTGTAGATGGACAGGGTTCTGGCCGAGGGGTCTGTGGCCTTGATCCAGCGGGGCATCCAGTAATGTGGGGTCCACTCACAGCGGCCGGGGTAATGCTTCTCAAAGATCGTCCTTATGAAGAAGCCCTCTTTGGTTGTGGGAGGATTGAAAGGGAACTTCTCACTGGCTTTCTCCAGCTGACAGTCGTTC
>TU193268
TTTTGGGATTTGGAGAGGGCTTCTTTAAAACTAGCGATCCCCAACCTTTGAGCGGCACTGTATATATTCCCTTACTAATGTGACAGGATAACTGAATATGGAGTCTACTTCAAACTAAGAagctttctgtgtttttgactTGAACTTACATCATATTAGGTCACCATAGCTTGACTGTTGTGACaatttgtctgtttttacaAGAAACAATTactgtgcaatttattttaaccaACAAGCCACGCTAGCCTACTCCTGTTTTGGttagagaaaagaaaagctctatttctatattttagaAACCTATAACCTGATAAGAGGATACAGTAACACGGCAACCTCGAAAAATACCTCGAATATAAATTCTATTTGGAAAAAACCCCTAAAAGATAGTCTAGTAAAGGGAACAGAGaaaataaggcaaaaaaaaaaaaaaaagcatttaaataatggCAACATTGTAGTTGTGTGGTCTGAGGCTTGATGGGATTACTGGTCTTTATCGGGCTTGTAGATGGACAGGGTTCTGGCCGAGGGGTCTGTGGCCTTGATCCAGCGGGGCATCCAGTAATGTGGGGTCCACTCACAGCGGCCGGGGTAATGCTTCTCAAAGATCGTCCTTATGAAGAAGCCCTCTTTGGTTGTGGGAGGATTGAAAGGGAACTTCTCACTGGCTTTCTCCAGCTGACAGTCGTTC

Function

NR:

description
PREDICTED: asparagine synthetase [glutamine-hydrolyzing]-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193265 True 699 lncRNA 0.41 2 5788566 5924971
TU193266 False 698 lncRNA 0.41 2 5788566 5924971
TU193268 False 697 lncRNA 0.41 2 5788566 5924971

Neighbor

gene id symbol gene type direction distance location
col28a1a col28a1,LOC107754784 coding upstream 49381 5725368 ~ 5739185 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding upstream 70885 5716696 ~ 5717681 (+)
LOC122323266 NA coding upstream 174436 5613068 ~ 5614130 (+)
LOC122323836 LOC107598234 coding upstream 217295 5569730 ~ 5571271 (+)
LOC122324215 NA coding upstream 255679 5531960 ~ 5532887 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 136578 6061549 ~ 6162543 (+)
mylipa mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572 coding downstream 309054 6234025 ~ 6252339 (+)
npr1a npr1a,npr1,LOC107694365,LOC107677481,LOC107754786,LOC107731544,LOC108435512 coding downstream 341412 6266383 ~ 6344260 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding downstream 421818 6346789 ~ 6361192 (+)
gon4la LOC107754817,LOC107694363,LOC107584344 coding downstream 440547 6365518 ~ 6377599 (+)
G130861 NA non-coding upstream 113722 5674295 ~ 5674844 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding upstream 118034 5659533 ~ 5670532 (+)
G130855 NA non-coding upstream 156138 5614264 ~ 5632428 (+)
LOC122324017 NA non-coding upstream 176228 5610988 ~ 5612338 (+)
G130835 NA non-coding upstream 201051 5565380 ~ 5587515 (+)
G130891 asns,LOC107754811,LOC107672863,LOC107731557,LOC107702657 non-coding downstream 5881 5930852 ~ 5932842 (+)
G130940 NA non-coding downstream 242655 6167626 ~ 6169359 (+)
G130944 NA non-coding downstream 302775 6227746 ~ 6228087 (+)
LOC122324219 NA non-coding downstream 330035 6255006 ~ 6263954 (+)
G130950 NA non-coding downstream 406694 6331665 ~ 6334244 (+)
LOC122323254 sdhaf3,LOC107702681 other upstream 35649 5745801 ~ 5752917 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 202911 5583505 ~ 5585655 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 474388 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 560340 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 608889 5176270 ~ 5179677 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 446864 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 538112 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 594949 6519920 ~ 6526080 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 767003 6691974 ~ 6696204 (+)
G131183 NA other downstream 908898 6833869 ~ 6836858 (+)

Expression


Co-expression Network