polr1h (znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594)


Basic Information

Item Value
gene id polr1h
gene name znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6648390 ~ 6649389 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU193649
GACGAATCTACTGTTTCGATGAAGGACCCAACATGTGCAACTGCGAGAACTGCCCTGAGAAGAGACGTCTCAGAATATCGACAAGAACtcttgttattgttattgtaactAGCGACGATATTGCACGTTTGAGGGCGTAGTGTGATCTTGTTTGAAGGCAGCGGCCTCGTTAGGGTGCAAATCTCCGTATTCTTTTCCAGAAATGTCCTGTTTTAGAGGCGATCTCAACTTTTGCCCGGAATGTGGGAATGTTCTTCCAGTGCCTGGCATGAAAAGTACCATTACCTGCCCGCGGTGCTCTTTCAAAGTCCCCGTTCAAGATTTCACAGGTCAAGTTATTAAGTCTTCGGTGGTTTTTAATTCTCTGGATCAGAGCTCCAGCGTTGTTGAGAGCGAAGAGGATGCTGAATTGAAGGGGCCGGTGATTGACAGGAAATGTTCCCGCTGTAACAAAGAAGGAATGGTTTATCACACAAGGCAGATGAGATCTGCAGATGAAGGACAGACGGTCTTCTTCACATGCATACACTGCAGGTTCCAAGAAAAGGAAGATTCGTGAGAAAATTGCTGCTGCTGTGGGCATTTGCTTGTGTTGGTTATCAggatttaaacagaaatatgaaatgtatat
>XM_043217561.1
CCGTATTCTTTTCCAGAAATGTCCTGTTTTAGAGGCGATCTCAACTTTTGCCCGGAATGTGGGAATGTTCTTCCAGTGCCTGGCATGAAAAGTACCATTACCTGCCCGCGGTGCTCTTTCAAAGTCCCCGTTCAAGATTTCACAGGTCAAGTTATTAAGTCTTCGGTGGTTTTTAATTCTCTGGATCAGAGCTCCAGCGTTGTTGAGAGCGAAGAGGATGCTGAATTGAAGGGGCCGGTGATTGACAGGAAATGTTCCCGCTGTAACAAAGAAGGAATGGTTTATCACACAAGGCAGATGAGATCTGCAGATGAAGGACAGACGGTCTTCTTCACATGCATACACTGCAGGTTCCAAGAAAAGGAAGATTCGTGAGAAAATTGCTGCTGCTGTGGGCATTTGCTTGTGTTGGTTATCAggatttaaacagaaatatgaaatgtatataaataaaaatgctttgtacatgttttcaaaataaaactaaacaaaaga

Function

symbol description
znrd1 DNA-directed RNA polymerase I subunit RPA12

NR:

description
DNA-directed RNA polymerase I subunit RPA12

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193649 True 631 TUCP 0.45 4 6648438 6649389
XM_043217561.1 False 495 mRNA 0.42 4 6648390 6649205

Neighbor

gene id symbol gene type direction distance location
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596,LOC107677462 coding downstream 148 6640009 ~ 6648242 (-)
gabbr1b gabbr1b,gabbr1,LOC107677456,LOC107584305,LOC107595614 coding downstream 23336 6519866 ~ 6625054 (-)
sacm1la sacm1la,sacm1l,LOC107694349,LOC107677458,LOC107584306,LOC107711326,LOC107754789,LOC108273174 coding downstream 139960 6494491 ~ 6508430 (-)
LOC122323303 LOC107584307,LOC107694350,LOC107711327,LOC107595591 coding downstream 154194 6485917 ~ 6494196 (-)
LOC122323305 LOC107754826,LOC107584364,LOC107694352,LOC107595620 coding downstream 164291 6478516 ~ 6484099 (-)
mgat1b LOC107694344,LOC107754829,LOC107677460,LOC107711329 coding upstream 11423 6660812 ~ 6670386 (-)
vars2 vars2,LOC107584340 coding upstream 23150 6672539 ~ 6696368 (-)
c19h6orf47 LOC107711334,LOC107677470,LOC107584299,LOC107595602,LOC107754833,LOC107694340 coding upstream 47513 6696902 ~ 6702200 (-)
si:ch211-152p11.4 LOC107754837,LOC107694339,LOC107584295,LOC107677469,LOC107711337,LOC107595601 coding upstream 67350 6716739 ~ 6725694 (-)
LOC122323845 LOC107584339 coding upstream 112686 6762075 ~ 6765872 (-)
G131114 NA non-coding downstream 208308 6438205 ~ 6440082 (-)
G130999 NA non-coding downstream 292915 6354956 ~ 6355475 (-)
G130982 NA non-coding downstream 355124 6248351 ~ 6293266 (-)
G130978 NA non-coding downstream 412113 6234044 ~ 6236277 (-)
G130973 NA non-coding downstream 450029 6198125 ~ 6198361 (-)
G131153 NA non-coding upstream 44503 6693892 ~ 6704443 (-)
LOC122323439 NA non-coding upstream 53094 6702483 ~ 6708065 (-)
LOC122324260 NA non-coding upstream 53934 6703323 ~ 6703389 (-)
LOC122324261 NA non-coding upstream 54482 6703871 ~ 6703937 (-)
G131165 NA non-coding upstream 105025 6754414 ~ 6755435 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other downstream 9170 6627598 ~ 6639220 (-)
G131006 LOC107754818,LOC107731580 other downstream 285218 6362347 ~ 6363172 (-)
LOC122324254 NA other downstream 1242754 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 1388226 5141505 ~ 5260164 (-)
G130763 NA other downstream 1396201 5245353 ~ 5252189 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 200980 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 707232 7356621 ~ 7360143 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other upstream 745791 7395180 ~ 7397946 (-)
LOC122323248 LOC107687071 other upstream 796369 7445758 ~ 7451916 (-)
G131373 NA other upstream 952744 7602133 ~ 7605143 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_09917664_09918469 NA coding CI01000054 null 9917664 ~ 9918866 (+)