med10 (med10,LOC107691542,LOC107595625,LOC107584362)


Basic Information

Item Value
gene id med10
gene name med10,LOC107691542,LOC107595625,LOC107584362
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6900635 ~ 6902398 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU193732
AGTTCGCTGTCATGGAAGCTGCGTTGGTTGAACAGATATCCGTCTTTTGTTGATAATTGTACAGTTTTATCCCAATTAAACCAATCGCACGCTTTACCTATATGTAAAACACAGCACGCCATGGCCGAAAAGTTTGATAATCTCGAAGAACACCTCGAGAAATTCGTCGAAAACATACGACAGCTTGGGATTATTGTCAGCGATTTCCAGCCCAGCAGTCAAACCGGACTCAATCAGAAACTGAACTTCATGATCACAGGACTTCAGGACATTGAGAAATGCCGACAGCAGCTTCATGATATCAACGTGCCGCTGGAAGTGTTCGAAAATTTAAAAGCCTCCTCATTTCTGAGCTGGGGAAGGTTTTTCCTGAAGAGATGGCTAAATATAAGGCCATTCACGGGGACGACCCTCCTTCATAAGTCACCAGTGCCACAACACTTCAGACGCAAGATGTACATATGTTGATATTAGTATAACACGTTTTTTAAGGTTGAATCCATCAgtgaaatatgcaaatttttaCGGCTTTTTCATCTTTGTATTTGCCTTTGTAATTCATACGATTACAGTTTAGAAACTGAGGGACATTTTGGGGGTGGGATGCGTCCCTGAAACGGTGCAAAGCGTTTCTTTTCCCTCATGCATTGTAATTTTCACAGCATTATTTTtagttgaataaatgattattttgtgtAATGACGAACACcggcttttttggttttttatcaGCTCTGTTGTTTCTAAAATGAATGTGTAAAGGTATCAGCCAGCC
>XM_043217670.1
ATTCGATGAAACGCTGCCGGAAAGTAGTTCGCTGTCATGGAAGCTGCGTTGGTTGAACAGATATCCGTCTTTTGTTGATAATTGTACAGTTTTATCCCAATTAAACCAATCGCACGCTTTACCTATATGTAAAACACAGCACGCCATGGCCGAAAAGTTTGATAATCTCGAAGAACACCTCGAGAAATTCGTCGAAAACATACGACAGCTTGGGATTATTGTCAGCGATTTCCAGCCCAGCAGTCAAACCGGACTCAATCAGAAACTGAACTTCATGATCACAGGACTTCAGGACATTGAGAAATGCCGACAGCAGCTTCATGATATCAACGTGCCGCTGGAAGTGTTCGAgtaTATTGATCAGGGTCGTAACCCTCAACTGTACACGAAGGAGTGCTTAGAAAGGGCTTTGGCTAAAAATGAGCAGGTCAAAGGAAAGATTGATACACTGACTAAATTTAAAAGCCTCCTCATTTCTGAGCTGGGGAAGGTTTTTCCTGAAGAGATGGCTAAATATAAGGCCATTCACGGGGACGACCCTCCTTCATAAGTCACCAGTGCCACAACACTTCAGACGCAAGATGTACATATGTTGATATTAGTATAACACGTTTTTTAAGGTTGAATCCATCAgtgaaatatgcaaatttttaCGGCTTTTTCATCTTTGTATTTGCCTTTGTAATTCATACGATTACAGTTTAGAAACTGAGGGACATTTTGGGGGTGGGATGCGTCCCTGAAACGGTGCAAAGCGTTTCTTTTCCCTCATGCATTGTAATTTTCACAGCATTATTTTtagttgaataaatgattattttgtgtAATGACGAA

Function

symbol description
med10 Predicted to enable transcription coregulator activity. Acts upstream of or within atrioventricular canal development and cardiac jelly development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Predicted to be active in chromatin. Orthologous to human MED10 (mediator complex subunit 10).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 10 isoform X1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15151 MED10, NUT2; mediator of RNA polymerase II transcription subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
TU193732 False 775 TUCP 0.40 3 6900660 6902398
XM_043217670.1 True 834 mRNA 0.41 4 6900635 6902329

Neighbor

gene id symbol gene type direction distance location
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605 coding upstream 23629 6859069 ~ 6877006 (+)
c19h5orf49 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 coding upstream 130890 6767641 ~ 6769745 (+)
atat1 atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600 coding upstream 183650 6704840 ~ 6716985 (+)
ddx39b ddx39b,LOC107584302,LOC107754831,LOC107694345,LOC107595593,LOC103042292,LOC108272881 coding upstream 240809 6649299 ~ 6659826 (+)
tnfa LOC107694347 coding upstream 383273 6515100 ~ 6517362 (+)
irx4b irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627 coding downstream 131185 7033583 ~ 7038126 (+)
mrpl36 mrpl36 coding downstream 141041 7043439 ~ 7044961 (+)
LOC122323892 vars2,LOC107584340 coding downstream 453698 7356096 ~ 7376316 (+)
LOC122323846 adcy3,adcy3a,LOC107703925,LOC107688975 coding downstream 475356 7377754 ~ 7395725 (+)
maco1a tmem57a,LOC107584286,LOC107687072,LOC107745723,LOC107709293,LOC107691503 coding downstream 678848 7581246 ~ 7590155 (+)
G131093 LOC107694325,LOC107711328,LOC107754828,LOC107584304,LOC107677461,LOC107595615 non-coding upstream 261406 6638481 ~ 6639229 (+)
G131016 LOC107677454,LOC107595587,LOC107584310,LOC107694359,LOC107754821 non-coding upstream 490894 6405385 ~ 6409741 (+)
G131010 NA non-coding upstream 506678 6392916 ~ 6393957 (+)
G130950 NA non-coding upstream 566391 6331665 ~ 6334244 (+)
LOC122324219 NA non-coding upstream 636681 6255006 ~ 6263954 (+)
G131241 NA non-coding downstream 54171 6956569 ~ 6956786 (+)
G131245 NA non-coding downstream 74132 6976530 ~ 6976854 (+)
G131249 NA non-coding downstream 79552 6981950 ~ 6982175 (+)
G131252 NA non-coding downstream 111491 7013889 ~ 7014418 (+)
G131256 NA non-coding downstream 129863 7032261 ~ 7032591 (+)
G131183 NA other upstream 63777 6833869 ~ 6836858 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 204431 6691974 ~ 6696204 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other upstream 374555 6519920 ~ 6526080 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other upstream 411875 6463083 ~ 6488760 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other upstream 499337 6371835 ~ 6401298 (+)
lpcat1 lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501 other downstream 144215 7046613 ~ 7066858 (+)
LOC122323953 sox4a,LOC107584287,LOC107694328,LOC107754846,LOC107711341,LOC107691508 other downstream 332073 7234471 ~ 7257652 (+)
LOC122323847 tmem57a,tmem57,LOC107584286,LOC107745723,LOC107687072 other downstream 548652 7451050 ~ 7454765 (+)
ldlrap1a ldlrap1a,LOC107709294,LOC107691509,LOC107562879,LOC107687073,LOC107745728 other downstream 689116 7591514 ~ 7605226 (+)
G131351 NA other downstream 706542 7608940 ~ 7615288 (+)

Expression


Co-expression Network