CI01000001_04976994_04988795 (NFASCB)


Basic Information

Item Value
gene id CI01000001_04976994_04988795
gene name NFASCB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4976347 ~ 4989082 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04976994_04988795.mRNA
ATATAAAATCCGAAGAAATGAATATAAGACAAAAATACGACAATAACACGAACACTGACGCAGTAGAATTACGCACAGGATACGCAGGTGCCTGAATGCAAATAGCTCTGTTGTGAGAAACGAATCACAGTTGCGGAAAGCGGAAGGGGGCGGAGACTTACAACAATACCAGTGGATTCATTTGCATGTGGAATTGTTTGGTTTGCCTGCTTCATTTTTAATGCGTCAGAGCGTTTTCAGAGTTTACCATTAACTCCTACTCAACACTTACAAAATGATACAAAAGCACTAATAATTATGATTTTTTTTTTTTTTTTACACTCAAACAAGATGACTCAAGGCAAGCAGGGCAATATTTGAGTATTTTGGTGCTCGTATGTTCCCTCACAACAAGACGGATGCTGTACACAGCAGCGATGAGAGCTCTGAAGTGTTGGAGGATTCCTGCCATACTTACGATCCTACAGCAAACATGGATTTTTGCTTTGGAAATTCCTCCTGAGGGTGAGGAAATGCTATTTTAACTCAGTTTTTATTTTGGTCCTTGTGACCAAAGGATACATGGCATTATTTACTATACATTGTCCTTTTAATTCGTTAAAATATTATATTTTTATATGTATATCCTCACAGTAAGGCAACCTCCAATGATCATTAAAGAGAGTGTTCAAGATCACATAGTAGATCCAGTTGACCCCATTATAGTGGAGTGTGAGGCAACCGGGAATCCACCTCCAGTGTTCACATGGACACGTGATGGGGTTTACCTGAATGTGGCACGGGATCCTCAGGTCAGCATGAGGCGGCGTTCTGGCACATTAGAGATTTTCTTCTGGGGTCGCCCTGATGACTATGAAGGCATCTATCAGTGCACAGCGACTAATGAGTTTGGCTCTGCTCTGTCCAGTCACATCCATCTGCGTGTCTCCAAGGCCCGTACTTGGTTGAAGGAGTATCTGGAGCCAGTCTCAGTGGTGGTAGGACTTCCTCTCATCCTTCCCTGCAATCCCCCAGTAGGCCCTCCAAAACCTGACACCTACTGGCTGAACAGCACTATGACGCCAATCCGGCAGGATCGTCGAGTATCAAAGGCAGAGAATGGAGATCTGTATTTCTCCAGTATCGTAGCAGAAGACGCTCTTACGAACTACGTATGTGTCGCCCGCTTCCCCTTCACGAACACCATCCAGCAGAAACCGCCCCTCATCCTGCAGGTGCTCACAGCTCGCATGGCAGCCCATACGGCACCCAAGTTTCTGAAACCCAAAGGAACTGTCAGCACAACAATTGCAATGCTGGGGGAAGAACTTGTTTTGGAGTGTTTTGCTGCTGGAGTTCCGACTCCCTCCATCAAATGGACTAAAGATTGGGAGGAGATGTCTATGACTGGAAAGAAGTTGGAGAATTTTAATAAGACTCTTAGAATAAAGAAGATCTCCATGGATGATGGAGGAGACTACATCTGCACCGCTTCAAACAGGATGGGCAGCCTGGACCACGTCATCACTGTCAGGGTCAAATCGGTTCCGTTCTGGGTGGAGAAGCCTGAGAGTCTGGTTCTGTCTCGTGATGACAGCGGTAGTATAGTGTGTAGAGCTGATGGTATTCCTCGACCCCAGATACAGTGGCTGGTCAACGGAGAGCCAATCAGTGATGCTCCTAAGAGTCCAGGCAGGCAGGTTTCAGGAGACACTTTGATTTTTGGTGGCGTGGTTCCAGACAGCGCTGCTGTGTTCCAGTGCAATGCTTCAAACCAGTATGGCTATATCATGGCAAATGCTTTCTTGGCCGTAATGGATATGAAGCCTCGTCTGCTGGGTCCCAGAGATGAACTGGTTAAAACAACAGAAGGCAATAATACTCATTTAGACTGCCCATATTTTGGCTCTCCTAAACCTGCCCTACGGTGGTCAAAAGGAGGACTAGGTACCTTAGAGGGAAATCGTTACGAGATTCTTCCAAATGGTACATTGGAAATCAGAAACACAAAGCTACAAGATCAGGGAGCATATGTGTGTGTTGCAAGCAATGTCATTGGGCGAGATGAGAAGGAGGTCCAACTAGAGGTCAAAGTAGTCATAAGAGGGAGTCTGGCTCGCTTTGATTGTAAGATTAAATTTGACCCGACTCTGGACGTTACCGTTACTTGGCTTAAGGACAAGAAGTTCTTGATCTTAGGAAGAAGGATGACAAAGGATGAGGATTCTCTGAGCATTGCTGATGTGTACAGAAGAGATGAAGGCGTCTACACCTGCAGGGTTAAAAGTGAACTGGAGGAGGTCACTGCCTCGGCCAAACTCATTGTGATGGACCGGCCGGACCCGCCCAGTGATTTAGAGATATCAGACCCATCAGAAAGGAGCGTCAGACTCACCTGGATTCCAGGACTGAGCAACCACAATCCTATTAAAGAGTACCTGGTTCAATATACTGAAGATCTCCTTGCAGACTATTGGCTAATACCGAGCGGCTGGAAGAACCTGACTAGTTACCCAGGCAACCTGAACTCTGTCGTTTTACAGCTAACACCATTCGTAGAGTACCGATTCCGGGTCATTGCTGTAAATGGCATCGGACCCAGTAAACCCAGCTGGCCATCTGCATACTACCAGACTGGAGGAGCTGTGCCTGATGCCATTCCAAGAAACATCCAAGGATTGGGAAGTGGAGTGTTCAGAAATAACATGGAAATCAGCTGGGAGCCATTGGAGTACAGAGAATGGAATGGGCCGAAACTGGGCTATATGGTTTGGTGGAGACGGAGAGATTCAAGGGAGGAGTGGAAGAACTACACAACATACTGGTGGTGTAGCTACATCATCTATGACACTGATACCTTCACGCCCTATGAAATTAAAGTTCAGGCCATCAACTTCTTCGGCTATGGCCCAGAATCCCCTGTTGTGATTGGTTACTCTGGGGAGGACCGTCCTGTTGCCGCTCCATCTGATCTGGCGGTGTCGGACATTGAAAGCACAAAGCTGACAGTCAATTGGGAACCAGTGGCACGAGCCGACATCATGGGTGAAATAAAGGAGTACAAAGTTTATTACTGGAGAGAGAGCAGTCGTCTGCCCTGGCACATTGTGAGCAGGAGGATTAAGACCAAGAGTTTTAAAGCTAATGGACCGCGTCTGTCTGGGACCCTGACTGGTCTTGTCCCATATAGTAACTACAGGATGTATATTGTAGTGGCCAATAACCGCTACGAGGGTCCACCCAGCAACACCATTGAGTTTCAGACACCTGAAGGAGTGCCCACGGTTCCCAGGTCGTTCAGGATCATGCACCGGCACTATGACACCATTTATCTAGACTGGGAGGAACCTGCAGAACCCAATGGCATTCTGACTGGGTACATTCTCAAATATCAGATGTTGAACATCACTCTGGGGGACAAAATCCAAGTGGAATACATTCCTCCTAACATCACGTACTTCTCTTTGCGCCGTTTGGACCGATACACTCGATACAAGTTCTCACTGGCAGCACAAACCGAGGCTGGAGTCGGGGAGGCATTCACAGAGGAATCACCCCATTTTACAACTGAGGAATATACCCGGGAGCAAGTGGACATTGTGACGCAGGGTTGGTTCATTGGCTTAATGTGTGCGGTTGCTCTCCTCGTTCTTATCATGCTCATAGTCTTTTTCATCAAGAGGAGCCGAGGAGGAAAGTACCCAGTGCGCGACAAGAAGGACTTTGCACTGGAGCCAATGGATGATAGAGAGAATGGAACGTTTGATTACAGGATAGCACGAGTGTCCACCATGCCCTATAGCAGACGTGAGGAGGAAAGTCGACAGGGGCGCAGTCAGGGTGCGATCGAGCACATTGGCAGGAGAACGAACAGTGACGACAGCCTCATGGAGTACGGTGAGGGGGAAGAGATCGAGTTTAACGAGGATGGCTCCTTCATCGGAGAGTACACTGGTGTCAGTAAGAGGAATATCGACAGGAGCCCGTACCATGACAGCTCTGAGCCCACGTCTCCTGTGGCCATCTACTCTTTTGCTTAGAGCTCATGGTGTCTGATTAAACCACTTTTTACACAGACGGACTGAGACTATGATCATTTAATCTGTTAGACAGGCTGGAAATGATGTATATAGGTGTGTTTTAAAGGTAAAACAGTGTTTCTGGGGATTTACAGAAAAAGTGCCAATCAGATTTGTTTTTCAAATCCACAAATCACGTGAGAGGAAGCCAAGCAAAGATGTCTTGATGTGTTTATCATGTTGATAAGAAGACTGAAAAGAAATGGCTGATGGAAGCTTGCTTTGCTGAACAAACTCATGTTCAGTTA

Function

symbol description
nfascb Acts upstream of or within central nervous system myelin formation. Orthologous to human NFASC (neurofascin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04976994_04988795.mRNA True 4306 mRNA 0.47 24 4976347 4989082

Neighbor

gene id symbol gene type direction distance location
CI01000001_04962494_04971921 NA coding upstream 4116 4962494 ~ 4972231 (+)
CI01000001_04950531_04960550 NACA, NACA.2 coding upstream 15652 4950531 ~ 4960695 (+)
CI01000001_04936808_04943256 PRIM1 coding upstream 32892 4936808 ~ 4943455 (+)
CI01000001_04914279_04922772 RND1B, RND1, RND1A coding upstream 52668 4914150 ~ 4923679 (+)
CI01000001_04901365_04901652 NA coding upstream 73780 4901275 ~ 4902567 (+)
CI01000001_04993860_04998535 NA coding downstream 4778 4993860 ~ 4998761 (+)
CI01000001_05051664_05059659 MFSD4B coding downstream 62447 5051529 ~ 5059940 (+)
CI01000001_05071017_05075175 NA coding downstream 80221 5069303 ~ 5075753 (+)
CI01000001_05075984_05079729 NA coding downstream 86902 5075934 ~ 5079731 (+)
CI01000001_05223340_05229184 IDH3G coding downstream 234258 5223340 ~ 5229659 (+)
G15789 NA non-coding upstream 40357 4935371 ~ 4935990 (+)
G15419 NA non-coding upstream 174817 4800973 ~ 4801530 (+)
G15416 NA non-coding upstream 178553 4797476 ~ 4797794 (+)
G15395 NA non-coding upstream 217928 4753717 ~ 4758419 (+)
CI01000001_04723418_04724292 NA non-coding upstream 250676 4723354 ~ 4725671 (+)
G15798 NA non-coding downstream 14088 5003170 ~ 5003390 (+)
G15800 NA non-coding downstream 16740 5005822 ~ 5006037 (+)
G15812 NA non-coding downstream 52284 5041366 ~ 5041565 (+)
G15817 NA non-coding downstream 71725 5060807 ~ 5061182 (+)
G15796 NA non-coding downstream 81390 5074401 ~ 5074805 (+)
CI01000001_03618075_03620436 NA other upstream 1354896 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3305343 1667762 ~ 1671167 (+)
G13051 NA other upstream 3931195 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4484290 483853 ~ 488825 (+)
G12614 NA other upstream 4665406 309144 ~ 310941 (+)
G15794 NA other downstream 72136 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 297667 5279837 ~ 5287698 (+)
G15995 NA other downstream 722803 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2543490 7531541 ~ 7540586 (+)
G17234 NA other downstream 3043042 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021590 CU234171.1 coding NC_007134.7 CM002907.2 17899226 ~ 17907404 (+)