lpcat1 (lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501)


Basic Information

Item Value
gene id lpcat1
gene name lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7046613 ~ 7066858 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU193813
GTTTTTATGGTCCCGTGTCACATGTACAGCTGCAGCTCATTCCTCAATCTCAGTCCCATTACTGCACGAGCTCACAGctttataattatgaaataattaattagaatttaattCCCTGATTAAGATAACATATGATGGCATTTACAGTCATTCTGAGTACAATAATGATGGGTTGAGGCATTTTTCTCTGTAATATTAGTGATATGAAAATAAGAAACTAATTTGCAAACTGAACATTGTGGAGTCGGACAcaatataattttcaaatatagtatttttaattgcatcatCTTTGAATGTAatctcaaaacaaaacacaagagtTATTGAAAAGTGCATTGGTATGTTggtaaattattacaaatgtatgatagactctctctgtcactcttcctcttctgtctctctctgtatctctctccttttctctctctcttcctcctctctctctctctcttctctctctctctctctctcttcctttcttttctctctcctccctcttttcctcttccctctctctccctcctttcctcttcttcctcctcctcagatGATTTTTGTGTCTTTCTGGAGAACTGTCCAGATTTTGTCGAGCAGTACCAGTGTCTCAGCGAGTGGATTCCTCAAGCTTCCAGAGAATGTACATCTCCCTCAGAGTCTCAGCCTTCAACGAACGGCTTCTGTGCTGACTTCAGCCCTCGAGATCCCAGTACTCACAGCAAGAAACAGGACTAAAAGCAGCTTTTACTATCACAGCTCGTCaccctcagtgtgtgtgtacttcTGGGTGTAGGAGAGGTGATGATACACTACATCATAAAGTTGAATTGGGATTTGCATCTGGGTACATCACCCCAGGGATTCCTCcagagttttgtttaaaaaaaaaaaccccttagctatttttttttataccccCCAAAGAATGTCTTTCAAAAGGAAACAAAACTGCCTTTTTGGAGATTTTAATTTCTATATAAAGTGCTGTTTGCTTTAACACGAGTGTGTggttttaatatgcaaaaaaaaaaaaactagttttggGTGATACAATATTAACAATGATGAGATATGTACCAATTGCAATTATATTAGTAGAAAGAAGATTTgagtgaattattatttttttttttgtaaatcatgtCTGAAAAAAAACGCAAATCCATCTCAAATAAATAGTGTGAACTGCTGTAAGAACAATAGTGATAACACTGGTGGCCTTCCCCGTTTAAAATCACTAGTGTTGTCAGTATTATTctatagattatatattatttatataaacatatgcaatttttatattttctcattAACGCCTTATGATGAAAACGAGGACAGTGTTTGAAAttaactttttcaaaataaaaatatttatgat
>XM_043218060.1
ACGCATGCGCACAGCGAAAACGCGCAAGATGCTGATCGCTCGGTAATTTACGGGAGCGGAGAGCTTCAAAAGCGAAGCCCAACGCCGCTAGGTCAAACCCGACTGGAAGCGCTCGCGCTCTGAAAAGTTCTTTGGCGAATAAGAGGAGCGCCGCGCGCACGCTTTTCCCGGGGACTTTTGCCTCTCTTTTAAAGACATCCCGTGCGTTTACTGTTTTAGTATGAGATTCCCCGACAGAAAACTACACGCGGCGGTGGATGGAGGGGACGCGGGCGTTTCAGCGCACTTCAGAAATCCTTTCGTGCACGAGTTGAGGTTTACTCCTCTGCAGAAACTCAAGaTCGCAGTGATGACCGTGACGCTGTTCCCTGTCCGTCTGCTGTTTGCTGCGTTCATGATGTTGCTGGCCTGGCCCTTTGCATTCGTGGCTACCGTTGGCCGTTCTGAGGATGCAGTTGAACCTCTGTCCTGGTGGAGGTGGCTGGTAGATCTGGCCCTAAAGGCCATCATGAGAGCCATGTGGTTTTCTGGAGGCTTTCACTGGGTCCGTGTGAAGGGCCGGCCGGCGCTGCCCAGCGAGGCACCCATCCTCACAATGGCCCCTCACTCATCCTACTTCGATGCCATCCCCGTCACCATGACCATGGCCTCTATAGTGATGAAGGCTGAGAGCAAAGACATTCCAGTCTGGGGCaCTCTTATCAAATTCATCCGGCCTGTGTTTGTGTCCCGCTCGGATCAGGACTCTCGGAGGAAGACCGTGGAGGAGATCAAACGCAGAGCTTGTTCGGATGGCGAATGGCCTCAGATCATGATATTTCCGGAGGGCACATGCACCAATAGATCCTGTCTCATCGCGTTCAAGCCCGGTGCGTTCATCCCTGGAGTTCCCGTGCAGCCTGTGCTGCTGCGCTATCCTAACGAGACGGATACAATCTCATGGACGTGGCAAGGGCCTGGAGCGTTTAAGATTCTATGGCTCACATTGTGTCAGCTGCATAACTTTGTAGAAATAGAGTATCTTCCTACGTACACCCCatcagaggaggagaagaaggatCCAGCCCTGTTCGCCCACAATGTGAGACGTATCATGGCCAAGGCTCTTGGGTTGCCCATTATAGATTACTCCTTTGAGGACTGTCAGCTTGCTATGGCCAAAGGCCCCCTGCGCTTGCCTAGACACACCTGTTTGCTGGAGTTCGCCAGACTGGTACGATGTTTAGGCCTGAAGACGGGGGTCACTGATGAAGTCCTGCGTGAGGAAGCCTCCAGGGCCAGCAAACTTTGTGGAAACAGACTGGACGTGGAGGGATTTTCTCAGTACCTCAAACAACCTGTAACCGAAGCAGTACAGGACATTTTCTCACTTTTTGAAGAGCACGGAAAAGTGGATGTGAGAGAATACATCATCGCCCTGTCTGTGGTCTGCAGACCTTTCAGATACCTGGAGACCATTAAACTGGCATTTAGGATGTTTGAAGCAGAGGAGGATGGAGCGGTTGTAGAAGATGAGTTGGCTGTCATTCTGAACACCGCTCTGGGGATCGGAGATTTCGCTGTTTGTCACCTTTTCAGGGCCATCGATTGTCAAGACAAGGGAAAGATCACATTTGatGATTTTTGTGTCTTTCTGGAGAACTGTCCAGATTTTGTCGAGCAGTACCAGTGTCTCAGCGAGTGGATTCCTCAAGCTTCCAGAGAATGTACATCTCCCTCAGAGTCTCAGCCTTCAACGAACGGCTTCTGTGCTGACTTCAGCCCTCGAGATCCCAGTACTCACAGCAAGAAACAGGACTAAAAGCAGCTTTTACTATCACAGCTCGTCaccctcagtgtgtgtgtacttcTGGGTGTAGGAGAGGTGATGATACACTACATCATAAAGTTGAATTGGGATTTGCATCTGGGTACATCACCCCAGGGATTCCTCcagagttttgtttaaaaaaaaaaaccccttagctatttttttttataccccCCAAAGAATGTCTTTCAAAAGGAAACAAAACTGCCTTTTTGGAGATTTTAATTTCTATATAAAGTGCTGTTTGCTTTAA

Function

symbol description
lpcat1 Predicted to enable O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1).

NR:

description
PREDICTED: lysophosphatidylcholine acyltransferase 1

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005811 lipid droplet cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity molecular_function
GO:0047192 1-alkylglycerophosphocholine O-acetyltransferase activity molecular_function

KEGG:

id description
K13510 LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU193813 False 1381 TUCP 0.35 2 7065022 7066858
XM_043218060.1 True 2063 mRNA 0.51 14 7046613 7066477

Neighbor

gene id symbol gene type direction distance location
mrpl36 mrpl36 coding upstream 1652 7043439 ~ 7044961 (+)
irx4b irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627 coding upstream 8487 7033583 ~ 7038126 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605 coding upstream 169607 6859069 ~ 6877006 (+)
c19h5orf49 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 coding upstream 276868 6767641 ~ 6769745 (+)
atat1 atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600 coding upstream 329628 6704840 ~ 6716985 (+)
LOC122323892 vars2,LOC107584340 coding downstream 289238 7356096 ~ 7376316 (+)
LOC122323846 adcy3,adcy3a,LOC107703925,LOC107688975 coding downstream 310896 7377754 ~ 7395725 (+)
maco1a tmem57a,LOC107584286,LOC107687072,LOC107745723,LOC107709293,LOC107691503 coding downstream 514388 7581246 ~ 7590155 (+)
marcksl1b marcksl1,marcksl1b,LOC107745720,LOC107691511,LOC107584334 coding downstream 694798 7761656 ~ 7764418 (+)
hdac1 hdac1,LOC107562876,LOC107745719,LOC107584281,LOC108272688 coding downstream 701465 7768323 ~ 7773781 (+)
G131256 NA non-coding upstream 14022 7032261 ~ 7032591 (+)
G131252 NA non-coding upstream 32195 7013889 ~ 7014418 (+)
G131249 NA non-coding upstream 64438 6981950 ~ 6982175 (+)
G131245 NA non-coding upstream 69759 6976530 ~ 6976854 (+)
G131241 NA non-coding upstream 89827 6956569 ~ 6956786 (+)
G131272 NA non-coding downstream 149160 7216018 ~ 7217504 (+)
LOC122324170 NA non-coding downstream 317593 7384451 ~ 7387980 (+)
LOC122323469 adcy2a,LOC107551198,LOC107664610,LOC100707801,LOC107574671,LOC102200234 non-coding downstream 361686 7428544 ~ 7443464 (+)
G131339 e2f3,LOC107687070,LOC107745724,LOC107709295,LOC107691507,LOC107584335,LOC107562874 non-coding downstream 377744 7444602 ~ 7445080 (+)
G131341 LOC107687071,LOC107584285 non-coding downstream 378587 7445445 ~ 7577849 (+)
med10 med10,LOC107691542,LOC107595625,LOC107584362 other upstream 144215 6900635 ~ 6902398 (+)
G131183 NA other upstream 209755 6833869 ~ 6836858 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 350409 6691974 ~ 6696204 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other upstream 520533 6519920 ~ 6526080 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other upstream 557853 6463083 ~ 6488760 (+)
LOC122323953 sox4a,LOC107584287,LOC107694328,LOC107754846,LOC107711341,LOC107691508 other downstream 167613 7234471 ~ 7257652 (+)
LOC122323847 tmem57a,tmem57,LOC107584286,LOC107745723,LOC107687072 other downstream 384192 7451050 ~ 7454765 (+)
ldlrap1a ldlrap1a,LOC107709294,LOC107691509,LOC107562879,LOC107687073,LOC107745728 other downstream 524656 7591514 ~ 7605226 (+)
G131351 NA other downstream 542082 7608940 ~ 7615288 (+)
si:ch73-130a3.4 LOC107736638,LOC107584280,LOC107687100,LOC107584333 other downstream 717898 7784756 ~ 7786559 (+)

Expression


Co-expression Network