LOC122323893 (ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477)


Basic Information

Item Value
gene id LOC122323893
gene name ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7356621 ~ 7360143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU193894
CGAGGAGCGATCAGACTGGTGCAAATTCATCTCATGCATTCATCTCTGATTCATATAGCGTCTAGCTCGACGTCCCGACACGCCGACCGAGAGCTGCAGCCGCCGCGCTTTAATATCCTTTGAACTGAGAGCGGACTCTCATTAAAGACGACCGAGCGCCGCTGGGAAGGTTTATTGGGGTTTGATCAGCGCTATGGCGGAGGTGCCAGGTACATCGAGTGAGACGATAACGGAGACCGTTCAGACGGGCACGCCGCCTCCACCCCAGCAGGAGGGCAGAAGCCTGACCATCAAGCTCAGGAAAAGGAAGACGGAGAAGAAAGTGGAGTGGTCCAGTGACACGGTGGACAACGAGCATCTGGGCCGGAGGTCTTCAAAGTGCTGCTGTGTTTATGAGAAGCCTCGACAGTTCGGCGAGTCTTCCTCGGAAAGCGAGGGGGACGACGAGGAGGGCTGCGGAAGCGCGCACTGCATTCTGGGACATGGGAGAAGAGGCCACGGACAGAGGGAGGGTGGAGGGAGCACGACGCCCCCTAGCTCCGGGGGAAAGAACCCTCACTAGAGCTTGACACGAGCGGGAGGGAAGGGTAACGGACGGCGTGGGCACTACATTCATAATCCCTCATCCTCACTCACATCCGATTACATCACGCCATCACTGGGTGTCAAAAGCTTTTTGATGAATGAAAGCTTGTAGAGCAATGCAACGTGATTCGTTTTCTCCTCGGTCATTTGCGTAATGACCCAAAAGAGGgataaaccctttttttttttttttgcgatctGAATGCTGCAGAAAATTGATGTTTGTTGTACATAGGACattggtttttatttcttttgtaaaatcgGTATTTATTCGTCTCGCGTTTAACAACTTGATCTTAGTTTCGTGTTCACGAGCAACGTTTTAACggatttaaaatatgattcagCAGGGTTAGAGCTTCTAGTTCGGATTTGAAAGGAATGAATGCAGTATAATAAaaggatttattttctttttaatcaaacatgGTTTGCCTTGCGGTGTCACAATTCTAGCAGCAGTATTTCTTCATATCACTCGATCGTTCGAGGAACTTCAAACGTAACGTGTGTCGTGTGCTATAGTGNtttttttttttttttttttgacaaggGCGCATTAAAATCATTTCCATCAGCCGTCGTAAGTTTGCGTTCTAGTGAGACTCCCCTCAGACAATCAGACTAGTCAGAGACTCGGCGTGTACGTGCGGAGACATTGATGTGTTTATGACTTAGTGAAGTGGACTGAGAAACATCTGCGGTGCTGTACTTCCTTCTGAATGCCAACTGAGAGGCTGGATCATTGCTCAAAACCTGACCGAAATTAAACGGCAGCggtcaaatgaaagaaatagtTCAGCCGAATATGAACATATGCGGCTTTTCTACTCGGGTCATCGAGATGGAAATGAATTGGTTTGTTCACGGGAACAGATTTGATGAAATGTACGCGTTGCGTCATTTTCTCAGCAGTGTATcgtcttcagtgaatgggtgccgtctgaatgagagtccaaacagctgatgaaaacattacagtaacCCACTCGGCTACGgaccatcagttaacatcttgtgaagtgaaaagctaaTCCATCGAGACTCCTAACGACTAAAACATGACATCCATAATGCTGCTTTCTCCAGTGGAAGTCATCCTgactgaatcaggagagaaataagCACAGATCCGGCACTGTTTAGAGGCAAAAACGgctcaaaatgaataatttcttAGGATTGTAGGATAGTATATTGGTTAGAAGTGacggtttaaagttaaaacactaACTAATGGAGCATGCACGGCTTATttcttcacaagacattaactaatagaccggagtgctgtggattattgcgatgcttttttcagctctttctgacggcacccattcactgcagaggatccgccGATGAGCAAGAGATGCAATGCTAcacaagaaacaaactcatctaaaacttgggtgaactattctatAAAGCAGTGGGATTGATCTGAAAATGT
>XM_043218005.1
GTAGCCGGTCCGTCCCCAAATTGCGTCCGTTCCGAGGAGCGATCAGACTGGTGCAAATTCATCTCATGCATTCATCTCTGATTCATATAGCGTCTAGCTCGACGTCCCGACACGCCGACCGAGAGCTGCAGCCGCCGCGCTTTAATATCCTTTGAACTGAGAGCGGACTCTCATTAAAGACGACCGAGCGCCGCTGGGAAGGTTTATTGGGGTTTGATCAGCGCTATGGCGGAGGTGCCAGGTACATCGAGTGAGACGATAACGGAGACCGTTCAGACGGGCACGCCGCCTCCACCCCAGCAGGAGGGCAGAAGCCTGACCATCAAGCTCAGGAAAAGGAAGACGGAGAAGAAAGTGGAGTGGTCCAGTGACACGGTGGACAACGAGCATCTGGGCCGGAGGTCTTCAAAGTGCTGCTGTGTTTATGAGAAGCCTCGACAGTTCGGCGAGTCTTCCTCGGAAAGCGAGGGGGACGACGAGGAGGGCTGCGGAAGCGCGCACTGCATTCTGGGACATGGGAGAAGAGGCCACGGACAGAGGGAGGGTGGAGGGAGCACGACGCCCCCTAGCTCCGGGGGAAAGAACCCTCACTAGAGCTTGACACGAGCGGGAGGGAAGGGTAACGGACGGCGTGGGCACTACATTCATAATCCCTCATCCTCACTCACATCCGATTACATCACGCCATCACTGGGTGTCAAAAGCTTTTTGATGAATGAAAGCTTGTAGAGCAATGCAACGTGATTCGTTTTCTCCTCGGTCATTTGCGTAATGACCCAAAAGAGGgataaaccctttttttttttttttgcgatctGAATGCTGCAGAAAATTGATGTTTGTTGTACATAGGACattggtttttatttcttttgtaaaatcgGTATTTATTCGTCTCGCGTTTAACAACTTGATCTTAGTTTCGTGTTCACGAGCAACGTTTTAACggatttaaaatatgattcagCAGGGTTAGAGCTTCTAGTTCGGATTTGAAAGGAATGAATGCAGTATAATAAaaggatttattttctttttaatcaaacatgGTTTGCCTTGCGGTGTCACAATTCTAGCAGCAGTATTTCTTCATATCACTCGATCGTTCGAGGAACTTCAAACGTAACGTGTGTCGTGTGCT

Function

symbol description
ppp1r11 Predicted to enable protein phosphatase 1 binding activity; protein serine/threonine phosphatase inhibitor activity; and ubiquitin protein ligase activity. Predicted to be involved in defense response to Gram-positive bacterium; negative regulation of macromolecule metabolic process; and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. Orthologous to human PPP1R11 (protein phosphatase 1 regulatory inhibitor subunit 11).

NR:

description
protein phosphatase 1 regulatory subunit 11

GO:

id name namespace
GO:0004864 protein phosphatase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193894 True 2038 TUCP 0.46 3 7356621 7360111
XM_043218005.1 False 1141 mRNA 0.50 3 7357550 7360143

Neighbor

gene id symbol gene type direction distance location
sox4a sox4a,LOC107694328,LOC107584287,LOC107754846,LOC107711341,LOC107691508 coding downstream 117938 7234807 ~ 7238683 (-)
nrsn1l si:dkey-261i16.5,LOC107754809,LOC107694315,LOC107584359,LOC107711299 coding downstream 124494 7074386 ~ 7232127 (-)
ndufs6 ndufs6,LOC107754843,LOC107711315,LOC106570329 coding downstream 313275 7042113 ~ 7043346 (-)
irx1b irx1,irx1b,LOC107754808,LOC107584361,LOC107711312,LOC107691543,LOC107595626 coding downstream 375195 6977815 ~ 6981426 (-)
ube2ql1 ube2ql1,LOC107711339,LOC107754840,LOC107691500 coding downstream 456816 6889271 ~ 6899805 (-)
e2f3 e2f3,LOC107687070,LOC107745724,LOC107691507,LOC107562874,LOC107709295,LOC107584335 coding upstream 208400 7568543 ~ 7575504 (-)
LOC122323247 LOC107687071 coding upstream 216037 7576180 ~ 7581234 (-)
fndc5b fndc5b,LOC107584283,LOC107687074,LOC107691512,LOC107709291,LOC107562878,LOC108433842,LOC108238726 coding upstream 251844 7611987 ~ 7630756 (-)
eif3i eif3i,LOC107687089,LOC107745717,LOC107709286,LOC107691510 coding upstream 413822 7773965 ~ 7777114 (-)
txlna txlna,LOC107709285,LOC107691504,LOC107687085,LOC107562872 coding upstream 417330 7777473 ~ 7784225 (-)
G131318 NA non-coding downstream 921 7354144 ~ 7355700 (-)
G131305 NA non-coding downstream 94011 7260295 ~ 7262610 (-)
G131296 NA non-coding downstream 102065 7206189 ~ 7254556 (-)
G131265 mrpl36 non-coding downstream 311659 7043507 ~ 7044962 (-)
LOC122324041 NA non-coding downstream 471178 6883962 ~ 6885443 (-)
G131363 NA non-coding upstream 207805 7567948 ~ 7590147 (-)
G131411 NA non-coding upstream 589646 7949789 ~ 7950001 (-)
G131413 NA non-coding upstream 627377 7987520 ~ 7988325 (-)
LOC122323519 NA non-coding upstream 635944 7996087 ~ 7997257 (-)
LOC122324217 NA non-coding upstream 686133 8046276 ~ 8046879 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other downstream 497961 6850369 ~ 6858660 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other downstream 707232 6648390 ~ 6649389 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other downstream 717401 6627598 ~ 6639220 (-)
G131006 LOC107754818,LOC107731580 other downstream 993449 6362347 ~ 6363172 (-)
LOC122324254 NA other downstream 1950985 5404516 ~ 5405636 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other upstream 35037 7395180 ~ 7397946 (-)
LOC122323248 LOC107687071 other upstream 85615 7445758 ~ 7451916 (-)
G131373 NA other upstream 241990 7602133 ~ 7605143 (-)
khdrbs1b LOC107745714,LOC107691518,LOC107584277,LOC107687088,LOC107709277,LOC107562753 other upstream 758806 8118949 ~ 8129270 (-)
trit1 trit1,LOC107691527,LOC107687082,LOC107709271,LOC107562762,LOC107724344 other upstream 927002 8287145 ~ 8320901 (-)

Expression


Co-expression Network