G131944 (runx1t1,LOC107702085,LOC107556395)


Basic Information

Item Value
gene id G131944
gene name runx1t1,LOC107702085,LOC107556395
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 9877452 ~ 9890523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU194850
TGCATGTAGAGCTTTTTGTAAACAGAGACTAAATGAAATACAGTCTCCAATGCAGGTATGAACATATTTATTACACAGTAAAGAGTACAACAATACCAGAATCATACTGCAAAGATTCACAGACTGACAGACCATTTACTACAGCCCCCAAAAAtgagagaataaaataaagaaaacagattAAACAAGAAACCACAGTTCTGACATAGTAGACTCAAAAACCCTAGAGTATTCGGAAACGGTGCGTCAGAGTCCACACCCTCCCAGCCCACCTGTAACCTGTGGTTCATGTTTACGTTAAGTATTGCACAACGACTTTCAtgagtttttttcacaataaagATTTTCGAAGAATCCTACGACTGCCCGTCCTGAACCCACCCGACCAATTCATTTCACTTAATGTTTCCGCTGTCCCATTATTATCCCAAAGTTTAATTCACTTTACAAactggagaaaataaaaaagtaacaccTGGCAAACAAGGCATGCGCAAATTCACCAGCCGTAACTTTTCGCTCACGTTTGGTGCGAATCCCCCATAAACACGAACCTAAACGACACCGACGAGCGGCCAAGCGTGTCTCACAACAGAAGACAGAAATGGGGGAAAAGGGGGTGCAGAAGAAGAGGAGGGCAATAGGAATATATCACATGATTTCTCATCTTTGACCATGGATTGAATTAATTATAGTGTATATCAAATGGAGTCAACACTctgaaatcctttttttttccttttgagttGACTCAAAGCGATTTGTACACGTGACAAACTTAAAATGaacataacattatttttttatttttttcattttttttttattttacgtattctattaattctttttttttctcatgaggTCTGCATTGTTACCAAGTAGTGATATGGTTTGCAGCTATATGAGCTTTTAACTTTGGGTTTAAGTCCTGTTCTCATGTGCCCATTTGGTTTGACTAGACCAGTGTCCGCTCAGCGACTGGTGCTCCTAACGTGCTGTCAGAGGTAGAGTGAGACTTTTTGCCACCGAGGAAAAAAGGTTGTAGCAAAACAGACGTACTAGATTGGGAAGGAGAAGGAGGAGTTACTTAACGCTTCGTCCGTGCTTATTTTATTCAGGTCACCCTGATCGAACTCACTACACTAActatatgtcttttttttttttaaaaatagtgtttCAAAACAGCTTAGCTGGCAGGTTCTCTTGCGATGCGGACAGGTGTCTTACACCTACGTTTTTTTGGATTATATAACCGTAGCATGCCGGAGGAGGCCGGGAGTGCGTCCAGAGCCAGCCACTCCTCCTAAGAGGTCAAATGCACAGCGTTTAGCACCATGGTTTGGGGGACGTGTGGCCCCTCAGAGTGCAGTTAAGTGCCCGTTCAGACCCCTCTTCCTCTTAAGCCATTGACGAGGTTGTTTCGTTTTAGATTCTCACATGGCTTTTAATCTTGAACTGAAACACTTGAAGGTTTGGTTATGCGCCGTTCATGAACGAGAAGAGCTTCGGTTGGGTCGGGCTGGTTGCCTTTCGGAGCGGCGTTCTTACGACGAATCCGTTTCGAGGAATGATACggaaagaaaaagacaacaatGAAACTCGCCCTGCAGGATCTATATATGGGATCCGACTTTTCGATTATTGCTCAATCATTCAGACCGCCTCATCCACACGTGAAAGCCTCTTTTCTTAGGAACTGCTACATGGTTTTGAGTGGCTCCTCCTCCCTACGAGCTCAATAGGGCTGGTCTTGGCTCTGGACAGGGGAGAGTTAAAGGTTTTCGAATGGAAACATTGCTCAGTGTGGCTTCCCCTGATAAACACGTGGAGAAAACAAGAATGCATTGGAGTGAGTCTCTTTTGTCATGGTTAAATCTTGGATAAAATCAGGTTTTGGTCCTTCATGTCTGTCTTTGGCTGTCTTCCATGTTAATTCTTTTGTAATACTGTGTATCCTGGTGCTCTGCAGTGTTAAAGCTGTCTGTTTTTCACCTCTGCATTTGGAAAGTTAGTgtcttttttgtacatttttttctttttttgtagaaaacaaaaacaacatatacCATAGCGTTCagtatgcatatgcatgcacTGTCCTTAACTAttcaaagcaaaatgtttagaaaaaaatgttaacaaaagcaGATTGTGAtacttctgttttctttttttctattttctttttttttctatttttttttttcatagatttttctctgtttttttaacaagaaaagaaaatcacagaTATGTAACGAAGCACTCCAAAGATAACCTATGAAGTGAAACTcctatggaaaaaaaactgccaaaaaGAAGCATGCCGAGAGAAACCGTGACAgtgcaaatacatttatgtacgTCCcatgtacaaaaacatttatgttagCATTCCATGTAACATGCTAGTTCTCagaaaaaacatctgaatgagACTGAAGTAGCAGCTCTGAGAGATAGCGTTTGTCTTTCGAAGGACAATgggaaaagtgttttttcttcttagaGAACTACAAGGGGACTAGCACAAACACATACGAATAGAAAAGCAGCttgcgagagagaaagagcgagagaaaaaaagagaaaatatgttCTTCCTTTTTGCACCTAGAAAGACTAAAAAGTTGTGACTGTGGTTTAAACTATTAATGCGTTGTCACAATTGTCCAGCACATGTACAATAAATAACCATTGGAGACGGCACAGGACACAAGTGTTTAACACAATGAGATCTAGAACGGCAAAAAGAAGCAGAACGAGGACGGATGGTGGGGCTAGAGATTGGCAGGACAGGAGAGGGCTCCAACAGCCAGTGATTTATGGGTAATTTCTCAGCCCTTTGTTTCCCAGCGGCTGTCACAGTGAGGTTCTGACAGTCCTGCTCTGGTGGGCCGATGacttcacttcctgtttagGGAGCTGATGGAGTGCATTTGGGATCAGGGCTCAGAGCGCatccttcattgcgccgtgcgGTACTCAACATCCAGCACGGGCCCTCCTCGCCCCTACATTCCTCAGTGaaacagctttttatttctcagacCATTGACCTGGATATTATCTTGCAGGAGAGGGACGAACATCTGCGTTCCTTCACAATCTGCTGCACATCTGCAGAGTTCAGCGCGCGAGCCAGAAACGCCGTCCGCCGTCTACTCCACCACGTCCGACGCAGATGCCCTTCATCTtggcgtgtttttttttctTTTACAAGGAACGCTGTCTTTTTGTCTTAATAATATTCAGAGTCTTTGCTTACATCAGCTATGAAGTATTTCCttggtttttgtcatttaaagtgTCTTTTAATGAGGTCAAATAGTTTCATATCCCAGCTACCGGATAAAGAGCTTTGAGAACGGAacgaaggaggaaaaaaaaatgacaaacaaacgGAACGAAGGGGAGGTCAGATATACTCATCGAGAGGTCCCGGCTGTCTACTCCATTTGTCTTCTTATTTACAAGAATGTAAGAGAGCCACAACAACAATAAACGACATTATCAACAGTAATCGATAATAGCTGTAGTAACAATAAAGAACAATGAGAATTTCAAACAAAGAATATCTTTGCGTTCTCTATCATGGCAAGTCAATATGACCCGAAATGGACCTCCTGTGGGGTGATCGCCCTAAGTACAGTCTCTTCTTTGTTAGTGCGCTAGGTTTAGCATTTTGGAGCGAGTGAGGCAGGTGAGTCAGTCCCCAGTCGTCTGAGGCATCAGGAACGGCCCGCTCGGGGCTCTAGCGCGGCGTGGTCTCTATGGCGGAGGGTGTGCCGGGCGTAGCCGAGCGAGGGGTAGCGGCGGACGGTGTATCCGCCGGGCTGCCTGCACCGCTGCTGGGGGTGGCCGAGGAGCTGACGGTGGCGGGGGTCTCGCCCTGCTGCTGAGCCTGCAGAGTCTGGCCACATACGTGGTGGTGCTTTTCCCAGTCCTTGTGCTGGCAGAAGGAACCGCAGTAACGCGCCGTATTGCAGCCGCTGCAGGTCTCGCTCGCCTTGCGCCCGCAGTTCCAGCAG
>TU194851
TGCATGTAGAGCTTTTTGTAAACAGAGACTAAATGAAATACAGTCTCCAATGCAGGTATGAACATATTTATTACACAGTAAAGAGTACAACAATACCAGAATCATACTGCAAAGATTCACAGACTGACAGACCATTTACTACAGCCCCCAAAAAtgagagaataaaataaagaaaacagattAAACAAGAAACCACAGTTCTGACATAGTAGACTCAAAAACCCTAGAGTATTCGGAAACGGTGCGTCAGAGTCCACACCCTCCCAGCCCACCTGTAACCTGTGGTTCATGTTTACGTTAAGTATTGCACAACGACTTTCAtgagtttttttcacaataaagATTTTCGAAGAATCCTACGACTGCCCGTCCTGAACCCACCCGACCAATTCATTTCACTTAATGTTTCCGCTGTCCCATTATTATCCCAAAGTTTAATTCACTTTACAAactggagaaaataaaaaagtaacaccTGGCAAACAAGGCATGCGCAAATTCACCAGCCGTAACTTTTCGCTCACGTTTGGTGCGAATCCCCCATAAACACGAACCTAAACGACACCGACGAGCGGCCAAGCGTGTCTCACAACAGAAGACAGAAATGGGGGAAAAGGGGGTGCAGAAGAAGAGGAGGGCAATAGGAATATATCACATGATTTCTCATCTTTGACCATGGATTGAATTAATTATAGTGTATATCAAATGGAGTCAACACTctgaaatcctttttttttccttttgagttGACTCAAAGCGATTTGTACACGTGACAAACTTAAAATGaacataacattatttttttatttttttcattttttttttattttacgtattctattaattctttttttttctcatgaggTCTGCATTGTTACCAAGTAGTGATATGGTTTGCAGCTATATGAGCTTTTAACTTTGGGTTTAAGTCCTGTTCTCATGTGCCCATTTGGTTTGACTAGACCAGTGTCCGCTCAGCGACTGGTGCTCCTAACGTGCTGTCAGAGGTAGAGTGAGACTTTTTGCCACCGAGGAAAAAAGGTTGTAGCAAAACAGACGTACTAGATTGGGAAGGAGAAGGAGGAGTTACTTAACGCTTCGTCCGTGCTTATTTTATTCAGGTCACCCTGATCGAACTCACTACACTAActatatgtcttttttttttttaaaaatagtgtttCAAAACAGCTTAGCTGGCAGGTTCTCTTGCGATGCGGACAGGTGTCTTACACCTACGTTTTTTTGGATTATATAACCGTAGCATGCCGGAGGAGGCCGGGAGTGCGTCCAGAGCCAGCCACTCCTCCTAAGAGGTCAAATGCACAGCGTTTAGCACCATGGTTTGGGGGACGTGTGGCCCCTCAGAGTGCAGTTAAGTGCCCGTTCAGACCCCTCTTCCTCTTAAGCCATTGACGAGGTTGTTTCGTTTTAGATTCTCACATGGCTTTTAATCTTGAACTGAAACACTTGAAGGTTTGGTTATGCGCCGTTCATGAACGAGAAGAGCTTCGGTTGGGTCGGGCTGGTTGCCTTTCGGAGCGGCGTTCTTACGACGAATCCGTTTCGAGGAATGATACggaaagaaaaagacaacaatGAAACTCGCCCTGCAGGATCTATATATGGGATCCGACTTTTCGATTATTGCTCAATCATTCAGACCGCCTCATCCACACGTGAAAGCCTCTTTTCTTAGGAACTGCTACATGGTTTTGAGTGGCTCCTCCTCCCTACGAGCTCAATAGGGCTGGTCTTGGCTCTGGACAGGGGAGAGTTAAAGGTTTTCGAATGGAAACATTGCTCAGTGTGGCTTCCCCTGATAAACACGTGGAGAAAACAAGAATGCATTGGAGTGAGTCTCTTTTGTCATGGTTAAATCTTGGATAAAATCAGGTTTTGGTCCTTCATGTCTGTCTTTGGCTGTCTTCCATGTTAATTCTTTTGTAATACTGTGTATCCTGGTGCTCTGCAGTGTTAAAGCTGTCTGTTTTTCACCTCTGCATTTGGAAAGTTAGTgtcttttttgtacatttttttctttttttgtagaaaacaaaaacaacatatacCATAGCGTTCagtatgcatatgcatgcacTGTCCTTAACTAttcaaagcaaaatgtttagaaaaaaatgttaacaaaagcaGATTGTGAtacttctgttttctttttttctattttctttttttttctatttttttttttcatagatttttctctgtttttttaacaagaaaagaaaatcacagaTATGTAACGAAGCACTCCAAAGATAACCTATGAAGTGAAACTcctatggaaaaaaaactgccaaaaaGAAGCATGCCGAGAGAAACCGTGACAgtgcaaatacatttatgtacgTCCcatgtacaaaaacatttatgttagCATTCCATGTAACATGCTAGTTCTCagaaaaaacatctgaatgagACTGAAGTAGCAGCTCTGAGAGATAGCGTTTGTCTTTCGAAGGACAATgggaaaagtgttttttcttcttagaGAACTACAAGGGGACTAGCACAAACACATACGAATAGAAAAGCAGCttgcgagagagaaagagcgagagaaaaaaagagaaaatatgttCTTCCTTTTTGCACCTAGAAAGACTAAAAAGTTGTGACTGTGGTTTAAACTATTAATGCGTTGTCACAATTGTCCAGCACATGTACAATAAATAACCATTGGAGACGGCACAGGACACAAGTGTTTAACACAATGAGATCTAGAACGGCAAAAAGAAGCAGAACGAGGACGGATGGTGGGGCTAGAGATTGGCAGGACAGGAGAGGGCTCCAACAGCCAGTGATTTATGGGTAATTTCTCAGCCCTTTGTTTCCCAGCGGCTGTCACAGTGAGGTTCTGACAGTCCTGCTCTGGTGGGCCGATGacttcacttcctgtttagGGAGCTGATGGAGTGCATTTGGGATCAGGGCTCAGAGCGCatccttcattgcgccgtgcgGTACTCAACATCCAGCACGGGCCCTCCTCGCCCCTACATTCCTCAGTGaaacagctttttatttctcagacCATTGACCTGGATATTATCTTGCAGGAGAGGGACGAACATCTGCGTTCCTTCACAATCTGCTGCACATCTGCAGAGTTCAGCGCGCGAGCCAGAAACGCCGTCCGCCGTCTACTCCACCACGTCCGACGCAGATGCCCTTCATCTtggcgtttttttttttttttttctaa

Function

symbol description
runx1t1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in protein autophosphorylation. Predicted to act upstream of or within negative regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human RUNX1T1 (RUNX1 partner transcriptional co-repressor 1).

NR:

description
PREDICTED: protein CBFA2T1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194850 True 4037 lncRNA 0.44 2 9886462 9890523
TU194851 False 3229 lncRNA 0.42 2 9877452 9890523

Neighbor

gene id symbol gene type direction distance location
trib1 trib1,LOC107565192,LOC107724318,LOC107702074,LOC107710180,LOC107556392,LOC107653840 coding downstream 238470 9631241 ~ 9638982 (-)
klhl38a klhl38a,LOC107724354,LOC107565193,LOC107702087,LOC107556389,LOC103030765,LOC108424967,LOC108272409,LOC105907674 coding downstream 292679 9579575 ~ 9584773 (-)
azin1b azin1b,LOC107724288,LOC107702092,LOC107565195,LOC107710131,LOC107653834 coding downstream 349465 9521341 ~ 9527987 (-)
rrm2b rrm2b,LOC107556385,LOC107702093,LOC107724293,LOC107565196,LOC108425040 coding downstream 356313 9516444 ~ 9521139 (-)
mtdha mtdh coding downstream 362434 9507489 ~ 9515018 (-)
lrrc69 LOC107724328,LOC107556328,LOC107653817,LOC107702067 coding upstream 18581 9909104 ~ 9911742 (-)
otud6b otud6b,LOC107556329,LOC107724319,LOC107702071,LOC107653818,LOC107556366 coding upstream 21842 9912365 ~ 9915059 (-)
rp9 rp9,LOC107556335,LOC107670274,LOC107724340,LOC107653847,LOC107710715,LOC107556368 coding upstream 116518 10007041 ~ 10011759 (-)
c19h18orf21 LOC107670294,LOC107724369,LOC107653848,LOC107710313,LOC107556336 coding upstream 121885 10012408 ~ 10025651 (-)
sla1a LOC107724327,LOC107556331,LOC107670275,LOC107653820,LOC107556370,LOC107710725 coding upstream 484188 10374711 ~ 10378838 (-)
LOC122323520 NA non-coding downstream 102989 9773311 ~ 9774463 (-)
G131910 NA non-coding downstream 229428 9647549 ~ 9648024 (-)
G131903 fam91a1,LOC107710596 non-coding downstream 232605 9603121 ~ 9644847 (-)
G131899 NA non-coding downstream 285596 9591326 ~ 9591856 (-)
G131896 NA non-coding downstream 306066 9569070 ~ 9571386 (-)
LOC122323594 NA non-coding upstream 51613 9942136 ~ 9945714 (-)
G132128 NA non-coding upstream 308050 10198573 ~ 10255238 (-)
LOC122323417 NA non-coding upstream 889941 10780464 ~ 10783613 (-)
LOC122323785 NA non-coding upstream 1280503 11171026 ~ 11175620 (-)
G132231 NA non-coding upstream 1594280 11484803 ~ 11487989 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other downstream 212993 9659356 ~ 9664459 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other downstream 568100 9308720 ~ 9309352 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other downstream 1090723 8724506 ~ 8786729 (-)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC107702119,LOC107584261,LOC107724282,LOC107743828,LOC107696212,LOC107555569 other downstream 1138666 8727259 ~ 8738786 (-)
tdp2b tdp2,LOC107743833,LOC107696206,LOC107555562 other downstream 1217966 8654498 ~ 8659486 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other upstream 39343 9929866 ~ 9984305 (-)
elp2 elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355 other upstream 400749 10291272 ~ 10311936 (-)
ctnnal1 NA other upstream 425098 10315621 ~ 10362527 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other upstream 849851 10740374 ~ 10745129 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 1279747 11170270 ~ 11170913 (-)

Expression


Co-expression Network