G132014 (macf1,macf1a,LOC107724266,LOC107653864,LOC107670270)


Basic Information

Item Value
gene id G132014
gene name macf1,macf1a,LOC107724266,LOC107653864,LOC107670270
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 10439693 ~ 10440259 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU194953
tacctccTCAAAGCGAGCTCTGATGATGGTGATCCAGTGTTTGATGGTTGTGATGCAGTCTGGGTGGCACACAGCCAGGATGGCTTCACCCATGCCAGCAGCTTTATTCACATCCACTCTCTTCTCCTCCACCGTTTGCATGAAATCCCGGTGCGTGTGCAATAGTGCCTGCAGAGTCTCTACCTCCTCTGGTAGGACGCCCCGGAAACGCAATGTTTGCTCCGCCTCGGAAAGCCACTCCAGTAACATCTGAACAGCTGTGCGGAACTCTTCTGcctgTTGAGAGCTTGTTGGAGCCGGGTCTGTTTAGAAACAGACAGGGCACAGACTGTTTCCCAGCGGTTGCTAAGCTCCTGAAGTTGAACCTTGACCCAGGCAGTGTCGTCCCGGCCTGTCTCCATCAGCTCTCGAGCAGACCGCTTCAGAGCCTGCACACTGCTTGTCCTTTTTCCCAGCTCTTTTTGGAAGAC

Function

symbol description
macf1a Predicted to enable structural molecule activity. Involved in organelle disassembly. Acts upstream of or within oocyte animal/vegetal axis specification. Located in cell cortex and mitochondrial cloud. Is expressed in hair cell anterior macula; inner ear; macula; oocyte stage I; and posterior crista. Human ortholog(s) of this gene implicated in lissencephaly 9 with complex brainstem malformation. Orthologous to human MACF1 (microtubule actin crosslinking factor 1).
macf1 Enables actin filament binding activity and microtubule minus-end binding activity. Involved in several processes, including Golgi to plasma membrane protein transport; positive regulation of axon extension; and regulation of focal adhesion assembly. Located in several cellular components, including Golgi apparatus; cytoskeleton; and ruffle membrane. Implicated in lissencephaly 9 with complex brainstem malformation.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194953 True 470 lncRNA 0.54 2 10439693 10440259

Neighbor

gene id symbol gene type direction distance location
wdyhv1 wdyhv1,LOC107653860 coding upstream 25931 10412271 ~ 10413762 (+)
ccn4a wisp1a,LOC107724346,LOC107670277,LOC107574716,LOC107556407 coding upstream 46735 10388363 ~ 10392958 (+)
abitram fam206a,LOC107670282,LOC107556369,LOC107710376,LOC107556344 coding upstream 125600 10312162 ~ 10314093 (+)
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365,LOC107653854 coding upstream 184455 10095157 ~ 10255238 (+)
galnt12 galnt12,LOC107724331,LOC107670286,LOC107710330,LOC107653850,LOC107556353 coding upstream 361525 10064486 ~ 10078168 (+)
angpt2b angpt2b,LOC107663733,LOC107724362,LOC107564496,LOC107698979,LOC107710743,LOC107565051 coding downstream 322892 10763151 ~ 10784158 (+)
LOC122323863 NA coding downstream 679004 11119263 ~ 11121001 (+)
LOC122323768 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 coding downstream 1067013 11507272 ~ 11510522 (+)
LOC122323771 NA coding downstream 1071084 11511343 ~ 11513891 (+)
LOC122323767 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding downstream 1075269 11515528 ~ 11521236 (+)
G132013 NA non-coding upstream 1207 10438088 ~ 10438486 (+)
G131982 LOC107574713,LOC107670279,LOC107724345,LOC107710403,LOC107653857,LOC107556406 non-coding upstream 37526 10026891 ~ 10402167 (+)
G131966 NA non-coding upstream 455387 9977593 ~ 9984306 (+)
G131958 NA non-coding upstream 494768 9942080 ~ 9944925 (+)
G131932 NA non-coding upstream 526937 9873151 ~ 9912756 (+)
G131985 NA non-coding downstream 84447 10524706 ~ 10580552 (+)
G131987 rnf19b,ak2,LOC107710473,LOC107653815,LOC107670272,LOC107724316,LOC107564491,LOC107556415,LOC107556372,LOC107670285,LOC107710539,LOC107724312 non-coding downstream 142491 10582750 ~ 10601467 (+)
G132081 NA non-coding downstream 192389 10632648 ~ 10697836 (+)
G132082 NA non-coding downstream 197182 10637441 ~ 10638699 (+)
G132180 NA non-coding downstream 435612 10875871 ~ 10880575 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 21597 10415640 ~ 10418096 (+)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other upstream 686137 9734220 ~ 9753556 (+)
G131801 trib1,LOC107724318,LOC107565192,LOC107702074,LOC107710180,LOC107556392,LOC107653840 other upstream 800732 9636973 ~ 9638961 (+)
si:ch211-215i13.3 LOC107579802,LOC107724304,LOC107702091 other upstream 901191 9536318 ~ 9538502 (+)
LOC122323856 LOC107745707,LOC107709282,LOC107691523 other upstream 1273599 9160370 ~ 9166094 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other downstream 1081970 11522229 ~ 11523881 (+)
LOC122323774 NA other downstream 1671020 12111279 ~ 12112897 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other downstream 1983031 12423290 ~ 12425078 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other downstream 2581158 13021417 ~ 13026026 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 2869168 13309427 ~ 13336749 (+)

Expression


Co-expression Network