elp2 (elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355)


Basic Information

Item Value
gene id elp2
gene name elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 10291272 ~ 10311936 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU195128
GGAAGCGTCTGTAATGGACACATGTCATGTTTCTTGTTGTGCTAATCGCACTCCTAACGTTGTGTCATGGGGCAGAGGGGGTCTCATCGCATTTGGGACATGTAATTCAGTTGCTCTTTATAATCCACAGGAAATAAGAATTGTTGAGGTGCTGAATAAACATACTGGAAGAGTGAATGCTGTCCAGTGGGTTCATAAACAAGACTGCAGTGCAGAAACCCCAGCTGGTCTCCGGTGGGTCGGATAATAGTGTTATTGTCTGGGAGAAGCAGGATGGGAAGTTCACAGCATGTGCAGTGTGTTCGGGACACTCGGCTCCCGTGTGTGCAGTGGATGCCATGTCTTTGCCCACCTCTCAATTACTGGTGGCCTCAGCGTCGTCTGACTCCACCGTTAAACTCTGGACATGCAGTTCTGATGCAGTTGAATGCCTCCAGACCGTATCTTTCGAGGGCGGGTTCATGATGGATGTCTCCTTGGCGCTGTTGCCAGGCAGCAGAGTTCCAGTACTGGCCTGTGGAGGAGATGACAGCAGAGTTCACCTGTATGCGCAGCTCAATGCACAGTTTCAGAGGCTTCTGACTCTGACAGGACATGAGGATTGGATCCGATGCGTAGAGTGGGCCGCTAAAGATGGAGAGCTCTGGCTAGCCAGCTGTTCTCAGGACTGTCTGATCAGAGTGTGGAGACTGTTTGCCAAGACTGCCACTGAACCAGACCAACAGACTGACGCTGTTCTCAAAATGAAGGAGAATGTTTTT
>TU195129
CTGAAGTTCACAGCATGTGCAGTGTGTTCGGGACACTCGGCTCCCGTGTGTGCAGTGGATGCCATGTCTTTGCCCACCTCTCAATTACTGGTGGCCTCAGCGTCGTCTGACTCCACCGTTAAACTCTGGACATGCAGTTCTGATGCAGTTGAATGCCTCCAGACCGTATCTTTCGAGGGCGGGTTCATGATGGATGTCTCCTTGGCGCTGTTGCCAGGCAGCAGAGTTCCAGTACTGGCCTGTGGAGGAGATGACAGCAGAGTTCACCTGTATGCGCAGCTCAATGCACAGTTTCAGAGGCTTCTGACTCTGACAGGACATGAGGATTGGATCCGATGCGTAGAGTGGGCCGCTAAAGATGGAGAGCTCTGGCTAGCCAGCTGTTCTCAGGACTGTCTGATCAGAGTGTGGAGACTGTTTGCCAAGACTGCCACTGAACCAGACCAACAGACTGACGCTGTTCTCAAAATGAAGGAGAATGTTTTT
>XM_043216956.1
TGGAAGATGGAAGCGTCTGTAATGGACACATGTCATGTTTCTTGTTGTGCTAATCGCACTCCTAACGTTGTGTCATGGGGCAGAGGGGGTCTCATCGCATTTGGGACATGTAATTCAGTTGCTCTTTATAATCCACAGGAAATAAGAATTGTTGAGGTGCTGAATAAACATACTGGAAGAGTGAATGCTGTCCAGTGGGTTCATAAACAAGACTGCAGTAAGTCGTTTGCCCTGGTCTCCGGTGGGTCGGATAATAGTGTTATTGTCTGGGAGAAGCAGGATGGGAAGTTCACAGCATGTGCAGTGTGTTCGGGACACTCGGCTCCCGTGTGTGCAGTGGATGCCATGTCTTTGCCCACCTCTCAATTACTGGTGGCCTCAGCGTCGTCTGACTCCACCGTTAAACTCTGGACATGCAGTTCTGATGCAGTTGAATGCCTCCAGACCGTATCTTTCGAGGGCGGGTTCATGATGGATGTCTCCTTGGCGCTGTTGCCAGGCAGCAGAGTTCCAGTACTGGCCTGTGGAGGAGATGACAGCAGAGTTCACCTGTATGCGCAGCTCAATGCACAGTTTCAGAGGCTTCTGACTCTGACAGGACATGAGGATTGGATCCGATGCGTAGAGTGGGCCGCTAAAGATGGAGAGCTCTGGCTAGCCAGCTGTTCTCAGGACTGTCTGATCAGAGTGTGGAGACTGTTTGCCAAGACTGCCACTGAACCAGACCAACAGACTGACGCTGTTCTCAAAATGAAGGAGAATGTTTTTCAAGTGTCTGGAGATGAGTTTGCTGTGACTCTTGAAAGCGTGTTGGCTGGCCATGAAAACTGGGTTTATGGGATTCACTGGCAACCTCCACGTGTCAAAGGCGACTCAGTGGAACAGCCCCTGAAGCTGCTCTCTGCCTCAATGGACAAGACCATGATCTTATGGGGGCCAGAGGAGGATTCAGGCATGTGGGTTGAGCAGGTTCGTGTTGGGGAAGTTGGAGGAAATACCCTGGGTTTCTATGGATGCCAGATGAGTCCAGACGGCTTTATGATTCTGGCTCATGCCTTTCACGGAGCGCTGCACCTCTGGCACTGTGACAGCAATCAGGGAGAGTGGAGGCCCAGTGTGGTCATTTCGGGTCATTTTAATGCAGTGCAGGACTTGAGCTGGGACCCTGAGGGAGAATTTATTATCACTGTCGGATCAGACCAAACCACTAGACTCCTTACACCCTGGACCAGAAACGGATGCTCAGAGGTTTACCTGCACGAGATCTCAAGGCCGCAGATACACGGTTATGACATGCAGTGTCTGACTATGGTTGGGCGTTTTCAGTTCGTGTCCGGTGCTGATGAGAAGGTCCTCCGGGTGTTCAAAGCTCCAAGGAATTTTGTGGAGAATTTTGCTAACATATCACGCACCTCTCTGGAGAAACTGCTGGGCTGTAATGACATAGCAGATCTCCCAGAGGGAGCCAGCACTCCTGCCCTTGGCCTGTCCAACAAGGCCGTGTTTCAAGGTGACCTCACATCTCAGAGCTCTCAACAGGACAGTGAAGATTTTACCAGCCTGTCCGACCAATATAAAGAATCCTACTTCCAACCTCTCAAACTCACggAGCCTCCGACAGAGGACGACCTCTTGCAGAACACACTGTGGCCAGAGGTACAGAAGCTGTATGGACACGGCTTTGAGATGTTTTGTCTGGCGTCGGATTCTGAGAGGACGGTGGTTGCCTCGGCCTGTAAGGCCTCTAAACCAGAACATGCTACCattcttctgtggagcacaacTTCCTGGAAACAGCTTCAGTCTCTGCCCTGCCACAGCTTGACCGTCACCCAGATGGGGTTCTCGTTGAATGGACGCCTTCTGCTCTCGCCGTTTCGAGATCGCACCTGGTCCTTATGGAGACGAGGAAACCCTGACTCAGATACAGaggcAAACTTTTCTCTCTACGCGAACACTACTAAGGACACAGCGGTTCACGCGCGTATTATTTGGTCATGTGACTGGAGCTCTGACAGCAAGTACTTTGTGACGTCAAGTCGAGACAAGAAGgTAATCATCTGGGGTCATCGTGGCTCTGGAGTCAGTGTCGGTGAATGTGAGGGTGAAAGCGTGACCCCTTGCTCCTCTGTTCTGGATGTTGGAGATTCAGCTACTGCTGTGTCTATCTGCCCATATGTCTGTTCAGATCAGAGTTATTTGCTGGCTGTAGGTCTAGAGAATGGGAAAATTGTGCTGTATAAATGGAGGCCGTCAGAGCATTTGTCTTCTGGATCAGACTggagcagatttggagaaagcAATGCTTGTCAAAGTCACACTCTGACGGTGAAGAGGCTGCGCTGGAGGCCGAGGCCAGGACGGGCAGGGCATGGTGGAAACGAAGAGCGAGCCTGGGTTCAGCTAGCCAGCGCTGGTGCCGACCATGTCGTCAAAATCTTCAACATCAAAATATCAGCCCTGTGACTCCATGCCGCCTCTGGTGATTATCTGCAGAGCGTCCAGCTGATATTCAGTACGAATGAACTGCTGTGAAGTCTTCAGCTGGCCAGTACGCCGTTTTTCATGGGGGATTCTGGGAACCCTTTTCTCTTCTTCGATTTTCAGCACTAATGTGATCTGTAAACACAAACTAATGTACTAtttatgatgtttaaaaaatatattgctttgTATTGTAATAAATGGCTCTATTCCAGTAA

Function

symbol description
elp2 Predicted to act upstream of or within tRNA wobble uridine modification. Predicted to be located in cytoplasm and nucleus. Predicted to be part of elongator holoenzyme complex and transcription elongation factor complex. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ELP2 (elongator acetyltransferase complex subunit 2).

NR:

description
elongator complex protein 2 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0010950 positive regulation of endopeptidase activity biological_process
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061133 endopeptidase activator activity molecular_function

KEGG:

id description
K11374 ELP2; elongator complex protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU195128 False 761 TUCP 0.50 8 10307958 10311928
TU195129 False 486 TUCP 0.53 5 10307958 10310675
XM_043216956.1 True 2702 mRNA 0.50 24 10291272 10311936

Neighbor

gene id symbol gene type direction distance location
c19h18orf21 LOC107670294,LOC107724369,LOC107653848,LOC107710313,LOC107556336 coding downstream 265621 10012408 ~ 10025651 (-)
rp9 rp9,LOC107556335,LOC107670274,LOC107724340,LOC107653847,LOC107710715,LOC107556368 coding downstream 279513 10007041 ~ 10011759 (-)
otud6b otud6b,LOC107556329,LOC107724319,LOC107702071,LOC107653818,LOC107556366 coding downstream 376213 9912365 ~ 9915059 (-)
lrrc69 LOC107724328,LOC107556328,LOC107653817,LOC107702067 coding downstream 379530 9909104 ~ 9911742 (-)
trib1 trib1,LOC107565192,LOC107724318,LOC107702074,LOC107710180,LOC107556392,LOC107653840 coding downstream 652290 9631241 ~ 9638982 (-)
sla1a LOC107724327,LOC107556331,LOC107670275,LOC107653820,LOC107556370,LOC107710725 coding upstream 62775 10374711 ~ 10378838 (-)
ndrg1a ndrg1a,LOC107710403,LOC107670279,LOC107724345,LOC107653857,LOC107556406 coding upstream 80788 10392724 ~ 10402213 (-)
si:rp71-45k5.2 LOC107724323,LOC107670287,LOC107574714 coding upstream 98141 10410077 ~ 10411619 (-)
psma2b si:rp71-45k5.4,psma2,LOC107724313,LOC103023870,LOC108425697,LOC108440756,LOC107686300,LOC107592434 coding upstream 101745 10413681 ~ 10416026 (-)
bmp8a LOC107724317,LOC107564489,LOC107556408,LOC107710496,LOC107670293,LOC107653863 coding upstream 107092 10419028 ~ 10426439 (-)
G132128 NA non-coding downstream 36034 10198573 ~ 10255238 (-)
LOC122323594 NA non-coding downstream 345558 9942136 ~ 9945714 (-)
G131944 runx1t1,LOC107702085,LOC107556395 non-coding downstream 400749 9877452 ~ 9890523 (-)
LOC122323520 NA non-coding downstream 516809 9773311 ~ 9774463 (-)
G131910 NA non-coding downstream 643248 9647549 ~ 9648024 (-)
LOC122323417 NA non-coding upstream 468528 10780464 ~ 10783613 (-)
LOC122323785 NA non-coding upstream 859090 11171026 ~ 11175620 (-)
G132231 NA non-coding upstream 1172867 11484803 ~ 11487989 (-)
G132241 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 non-coding upstream 1196781 11508717 ~ 11565630 (-)
LOC122323791 NA non-coding upstream 1201195 11513131 ~ 11515458 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other downstream 306967 9929866 ~ 9984305 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other downstream 626813 9659356 ~ 9664459 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other downstream 981920 9308720 ~ 9309352 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other downstream 1504543 8724506 ~ 8786729 (-)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC107702119,LOC107584261,LOC107724282,LOC107743828,LOC107696212,LOC107555569 other downstream 1552486 8727259 ~ 8738786 (-)
ctnnal1 NA other upstream 3685 10315621 ~ 10362527 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other upstream 428438 10740374 ~ 10745129 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 858334 11170270 ~ 11170913 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other upstream 1397987 11709923 ~ 11756438 (-)
G132292 NA other upstream 1520237 11832173 ~ 11832907 (-)

Expression


Co-expression Network