LOC122323871 (ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384)


Basic Information

Item Value
gene id LOC122323871
gene name ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 11709923 ~ 11756438 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU195332
CACTGATCAATCACAAAGACAAGCTCAAGAAGACGGAGAAGACCTTACGGGCCATCCAGAGAGTGGGGCAGGCGGTCAGTGTTGCAGTTGGCCGCTTCGTGGCGGTGGGTGAAGCCATTGCAGCAGAGAATGAAGACTTGAAGGACGAGATGGGACTGGCTTGCTTTGAGGCCCGGAGAGCAGGCACTGCCATAGCTCAGCTGACGGATGTGTCCTGTCTGGAGCAGTGTGAGGGCGATGGGCGCAGCACTGTGTTTAGTGACAGGACCGGCATGGTGAAAGCTGCTCGCATGCTGCTCTCCTCTGTTACCAAAGTCCTGGTGCTCGCAGACTGCATCGTTATCAAACAGATCATAAGCTCCCGCAACAAAAAGCCTCACCGTGACGAgcctacctgagctaattcccATTGCCTCACCGTGGACTC
>XM_043217978.1
ATGTTCCTGCTGGCACAGGGACAGATGCTGGCTCAAGTTGCTCTGCTTATGGAATGCGTagttcaaaagttttggGATGGCTCGTGGCTGTCTAATATCGGCCGGAGGAGCGGTGAGGCAGGACGGGACCAGTTATCTCTCACCTTAGCGTCTGATTACAGCCATCTTCAGGGAGAGGTGTCAGACACAGACCGAGTGCTGGACCACATGATGACGCATTTATGCCATATTTTAAACGTTATTTTGCTAAACATTGCTTTGTTTGTCTCCTTCCAGATTACCACACTGATCAATCACAAAGACAAGCTCAAGAAGACGGAGAAGACCTTACGGGCCATCCAGAGAGTGGGGCAGGCGGTCAGTGTTGCAGTTGGCCGCTTCGTGGCGGTGGGTGAAGCCATTGCAGCAGAGAATGAAGACTTGAAGGACGAGATGGGACTGGCTTGCTTTGAGGCCCGGAGAGCAGGCACTGCCATAGCTCAGCTGACGGATGTGTCCTGTCTGGAGCAGTGTGAGGGCGATGGGCGCAGCACTGTGTTTAGTGACAGGACCGGCATGGTGAAAGCTGCTCGCATGCTGCTCTCCTCTGTTACCAAAGTCCTGGTGCTCGCAGACTGCATCGTTATCAAACAGATCATAAGCTCCCGCAACAAAGTGCTGGTTACCCTGGAGCAGCTGGAGAGAGTCAGCACTTTTCAGGAATTTGTCCAAATCTTCAGCCAATTTGGGAACGAGATGGTAGAGTTTGCCCATCTCACAGGAGACAGACAGAATGATCTgaaggatgaaaagaaaagagctcGGATGGCCGCCGCACGTGCTGTGCTGGAGAAATGCACCATGATGCTCCTCACAGCCTCCAAGACTTGTCTGAGACATCCAGACTGTGAGTCGGCACGGATCAACAAAGAAGCAGTCTTCCAGCGTATGCGTCTGGCCCTGGAGCAAGTCATTGAGATTGTGACTGACACAAGGAGCGGTGGGGAGACCAAAGCACTTCCTGTCAGCATCTACGCTGGGATTAGAGACTTTAAGGTTAAAGTGGAGGGTCTGAGAGACTCTCTGTACTGTGTGTCCTGTGAGGCTGTGGCGGCTCAGCTGGAAGCTCTGGTGGAGAAAACCGAAGACTTTACAGACTCTGCCTACACCAGCCATGAGCAGAGAGAGACAATCATACAGCTCTGCCAGATCACACGTCAGGAGACCAAACAGCTCATCAGCACATGGAGACACGCGCAGCAATCGCTTAAAGCCAAAGAGGCCACGGACGAGGTGGAGCTCTCTATTTTGAAGACTTGTCAGAGTGTCAGCGATCTCAGGCGAGAGcTTCATAGGGTGGGTGGAAGGGCCACTGAGCTGCTGAAGCTGCATTCAGATCATCTGGTGCTGCAGGCCCTGAAGGCCTCCGGTGGGGATGGAAACCTGGAGGCTGTGGCTGATTATGCCGGCACACTGACTGAACACAAAGAGCAACTGGTGGAGACTTGCCGTTTGCTCTGCCACATTTCTGGGACTGAGCCGCTGGAGATCACCTGCGTTCATGCTGAGGAAACTTTCCGTGTCATTGGTCCTCAGATCATCTCAGCAGCACAGACCCTTGCTCTGCACCCCACCAGCAAGATTGCCAAAGAAAACCTGGATGTGTTTTGCGAGGCCTGGGAGTCCCAGCTGTGCGACATGGCCATCCTACTGAAGGAGATCAATGATGTGTTTGAGGGCCGCAGAGGTGATAAGAAAACATATCTGTCTCTACCCAGACCAGGGAAACACTCTGCCAACCTGAAGACGGTGAAGGCTGCCAAACTTGACGCTGAGGAGCAAACCACCATCGCCAAGCTTGGGCTGGAACTGTGTCTCCTCACTTCAGATGTGGACTCAGAGGTGGAGCGCTGGGACGAGCAGGACCACGACATGGTTCGGCTGTGTCAGATCATATCCAGCATGGCTTATTCCATGTACCTCTTCACCAGGGGGGAAGGCCTACTGAAGACAACTTTGGATCTATTCCACCAAGCCGAGgtgttGTCAGACCAAGGTCTCCAGCTGTGCCACATCCTCCACTCTCTCTGTGCGCAGCTGCTGGATGAAGACAGAATCCTTATTCTGTCTGAGACCGAGAAGCTGTCAGCCGCATGTCAACAGCTGCAGGTCTGTGCCAAGACTCCGGTTCAGGGCAAGAGCGCCATCTTTCAGAAGGTCGACTCATCCATACAGAATACCAAAGGCATTTTGACAGTGGTGGTATATTTACTGCCCATCTGTAATAAGCTCATCAGAAAGTGTAAAGCAGAGCGCAGCTGTCTGGCTTCACCTCAGCACTGGAGGGAGAAGCAGCTGAGCACGACCGTCAGCGAGGAAAATCTGAACGGCAAAGGCTCCAACGGCTTCGTCAAATCCTTGGAGCAACACATGGCCAATCTAACATTCCTGGAGAGCAAATAGCTCTGAAAACCAAAGGCTCTTCTGCCTGTTGTCGCGCACACAGTGCATGGCAATGCACTCGCACACAACGTGCCATTCTTTGTGCTTCTGCCCATTCGCTTTGTGGTGTCACGATAGCGTTAGCA

Function

symbol description
ctnnal1 Predicted to enable actin filament binding activity and cadherin binding activity. Predicted to act upstream of or within Rho protein signal transduction and cell adhesion. Predicted to be located in cytoplasm and cytoskeleton. Orthologous to human CTNNAL1 (catenin alpha like 1).

NR:

description
PREDICTED: alpha-catulin-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195332 False 427 TUCP 0.56 3 11726323 11737482
XM_043217978.1 True 2567 mRNA 0.53 24 11709923 11756438

Neighbor

gene id symbol gene type direction distance location
LOC122323775 fam206a,LOC107670282,LOC107556369,LOC107556344,LOC107710376 coding downstream 123852 11584050 ~ 11586071 (-)
LOC122323869 NA coding downstream 213310 11490127 ~ 11496613 (-)
csmd2 csmd2,LOC107698986,LOC107663732 coding downstream 591642 10876437 ~ 11118281 (-)
col8a2 col8a2,LOC107564494,LOC107710560,LOC107724334,LOC107565043 coding downstream 981916 10637428 ~ 10728007 (-)
ptp4a2b LOC107564493,LOC107670276,LOC107653869,LOC105012508,LOC103042327,LOC108257240,LOC107710550 coding downstream 1073032 10617563 ~ 10636891 (-)
efcab1 efcab1 coding upstream 432844 12189282 ~ 12190901 (-)
LOC122323777 NA coding upstream 434600 12191038 ~ 12192305 (-)
LOC122323778 LOC107567967,LOC107722131,LOC107670237 coding upstream 441437 12197875 ~ 12199318 (-)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776,LOC107567974 coding upstream 624006 12380444 ~ 12415751 (-)
tfpi2 tfpi2,LOC107722157,LOC107670228,LOC107731825,LOC107667768,LOC107558578 coding upstream 664440 12420878 ~ 12423119 (-)
G132281 NA non-coding downstream 48 11708924 ~ 11709875 (-)
LOC122323787 elp2,LOC107556355,LOC107670280,LOC107724330,LOC107556343,LOC107653855 non-coding downstream 3651 11705086 ~ 11706272 (-)
G132241 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 non-coding downstream 144293 11508717 ~ 11565630 (-)
G132245 NA non-coding downstream 190644 11517185 ~ 11519279 (-)
LOC122323791 NA non-coding downstream 194465 11513131 ~ 11515458 (-)
G132290 NA non-coding upstream 73909 11830347 ~ 11830796 (-)
G132293 NA non-coding upstream 82098 11838536 ~ 11839034 (-)
LOC122323794 NA non-coding upstream 167583 11924021 ~ 11934507 (-)
G132296 NA non-coding upstream 194563 11951001 ~ 11994560 (-)
G132332 NA non-coding upstream 309577 12066015 ~ 12066615 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 539010 11170270 ~ 11170913 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other downstream 964794 10740374 ~ 10745129 (-)
ctnnal1 NA other downstream 1347396 10315621 ~ 10362527 (-)
elp2 elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355 other downstream 1397987 10291272 ~ 10311936 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other downstream 1725618 9929866 ~ 9984305 (-)
G132292 NA other upstream 75735 11832173 ~ 11832907 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other upstream 679341 12435779 ~ 12438085 (-)
sem1 NA other upstream 841336 12597774 ~ 12669215 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other upstream 1271379 13027817 ~ 13029349 (-)
G132733 NA other upstream 1528093 13284531 ~ 13285461 (-)

Expression


Co-expression Network