G132336 (sfpq,LOC107394926)


Basic Information

Item Value
gene id G132336
gene name sfpq,LOC107394926
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12123604 ~ 12123995 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU195432
TTACGTTTCTGCATCTCCTGACTGTGCAACTCTTCCATGCGACGAAGTTCCTCCTGACGTCTAAGGAGgtctGTCTGAGCATGTTTGCTTGGTGCTCATGATAGGCATCTTCCATTTCTGCTTCTAGCTTCTCACGGGCCTCGCAAATGTTTTTCTCCACTTGCTGTCTCTGCTGTTTCTCCATCTCATCAAGAGACTTCCATCGCTGGGAGTACTCAAACTCAAAGGTGCCAGGACGGGCGAACCGAGGAGGTTGCTCTCGCTCCCTGAGGGCAAATCAAAT

Function

symbol description
sfpq Predicted to enable RNA binding activity. Acts upstream of or within central nervous system development and negative regulation of axon regeneration. Located in neuron projection and nucleus. Is expressed in brain; eye; gut; heart; and muscle cell. Orthologous to human SFPQ (splicing factor proline and glutamine rich).

NR:

description
PREDICTED: splicing factor, proline- and glutamine-rich isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195432 True 283 lncRNA 0.51 2 12123604 12123995

Neighbor

gene id symbol gene type direction distance location
LOC122323775 fam206a,LOC107670282,LOC107556369,LOC107556344,LOC107710376 coding downstream 537533 11584050 ~ 11586071 (-)
LOC122323869 NA coding downstream 626991 11490127 ~ 11496613 (-)
csmd2 csmd2,LOC107698986,LOC107663732 coding downstream 1005323 10876437 ~ 11118281 (-)
col8a2 col8a2,LOC107564494,LOC107710560,LOC107724334,LOC107565043 coding downstream 1395597 10637428 ~ 10728007 (-)
ptp4a2b LOC107564493,LOC107670276,LOC107653869,LOC105012508,LOC103042327,LOC108257240,LOC107710550 coding downstream 1486713 10617563 ~ 10636891 (-)
efcab1 efcab1 coding upstream 65287 12189282 ~ 12190901 (-)
LOC122323777 NA coding upstream 67043 12191038 ~ 12192305 (-)
LOC122323778 LOC107567967,LOC107722131,LOC107670237 coding upstream 73880 12197875 ~ 12199318 (-)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776,LOC107567974 coding upstream 256449 12380444 ~ 12415751 (-)
tfpi2 tfpi2,LOC107722157,LOC107670228,LOC107731825,LOC107667768,LOC107558578 coding upstream 296883 12420878 ~ 12423119 (-)
G132333 NA non-coding downstream 3006 12120347 ~ 12120598 (-)
G132332 NA non-coding downstream 56989 12066015 ~ 12066615 (-)
G132296 NA non-coding downstream 129044 11951001 ~ 11994560 (-)
LOC122323794 NA non-coding downstream 189097 11924021 ~ 11934507 (-)
G132293 NA non-coding downstream 284570 11838536 ~ 11839034 (-)
G132329 zmym4 non-coding upstream 35706 12159701 ~ 12182143 (-)
LOC122323784 NA non-coding upstream 38620 12162615 ~ 12170848 (-)
G132353 LOC107722138,LOC107566772 non-coding upstream 50568 12174563 ~ 12177406 (-)
G132355 NA non-coding upstream 54950 12178945 ~ 12181367 (-)
G132363 NA non-coding upstream 124386 12248381 ~ 12249423 (-)
G132292 NA other downstream 290697 11832173 ~ 11832907 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other downstream 367166 11709923 ~ 11756438 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 952691 11170270 ~ 11170913 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other downstream 1378475 10740374 ~ 10745129 (-)
ctnnal1 NA other downstream 1761077 10315621 ~ 10362527 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other upstream 311784 12435779 ~ 12438085 (-)
sem1 NA other upstream 473779 12597774 ~ 12669215 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other upstream 903822 13027817 ~ 13029349 (-)
G132733 NA other upstream 1160536 13284531 ~ 13285461 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other upstream 1370835 13494830 ~ 13502370 (-)

Expression


Co-expression Network