bet1 (bet1,LOC107669829,LOC107722155,LOC107731720)


Basic Information

Item Value
gene id bet1
gene name bet1,LOC107669829,LOC107722155,LOC107731720
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12435779 ~ 12438085 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU195513
CGTGGCGCTGGTGGAGTGCGAAGGCGAAAGTACAGTTACTCTAAAGAGGAAGATAAGGAAATATTTGTGACATTACGTTTAAACTTCAGTGGTCGTATATCATATAAAGGTTTCCGGCTGATAATGAGGCGCGCAGGTTTGGGTGAGGGCGGTCCTCCAGGCAATTACGTTGCAAGTGGATACAGCGTGTATGAGGAGGAGAACGAACATCTACAGGAGGGACTGAGAGCTAAAGTACATGCGCTTAAACATCTTTCAATTGACATCGGAAATGAAGTCAAGTACCAGAATAAAATGTTGGGCGAAATGGACTCGGACTTTGACTCCACTGGAGGTTTGCTGGGAGCCACCATCGGTAGATTGAAGCTCCTCTCCAGGGGAAGCCAAACCAAGGTGTACTGCTACATGCTGCTGTTTGCCCTGTTCGTGTTTCTGGTCCTGTACTGGGTGATCAAACTGAGGTGATCGTAGTGCTGACGAGACTCTTCGGGACCTTTTATTCGTGCCATGCTCATTTGGGGTAGAGGGTCAGATTCCTCAGAGATGATGAAGTCTGAGGTTGCTGAGGAATACGAGAGCGCTTTCTTTCCATTGGACAAGAAGTTGATCCATTGATTGACAATGTGCAATATGAGACAAAAATATGTCCTAACCCAACATTAGTGTCCCCCGAGGGGAAGGGATGGTTCTAGTTGTCTAATACCggccacaaaaatattttgaaagattaACGACAtgcatcttctttttttcagaaacaatAATGACCTTTGTTTAATGGTTCTGTTCTTTTTaggagaaaaataattattttcagtgcTATAAATGTGTGCTAATTTATACTTTCTATAAGGATAAAGTTAAATGCGTTTAAAAGAGTGGCACACAGCAGCACAGTAGTCCTTTAATCGTATAGTTGAAAATTCAGGTTATGACAGCTGTTTAGCTGGATGGGGTGCAAACAAAATAAGACCTATTCATCCTTTACGTTTCCTTTGTTTTACTGTGCAAATCTACATGGCATCTTTAAAAGAGTTGCCACAAAATTGTGTGAATACAGTGTTCAAAGGGGTGCTCTTCAGACTGTGAAAACTGTACATGAGTTTTTGTGCAATGCAGATGTGTAATATCCATATCAGAAACAACCCCAGAATTCTGTGTACTTCAGAAATGTGTTAATTTTTaggttcaatttttttttttttgctctctgtttaaaataatgcatggtTAAAGTTTTTAGAAAccaatttgtaaataaatgtaatttctgagagaattattacatataaaattcCTTTATGTTGTCATGTTTTCATATATCCCATTTACGATTGTCACGAATCTTTTCGAGCTGCTTAagaattaaaactttatttcttttcatgcatattaacaaacatttattaaaactaatcaCAATTTACATATGTTACATATTACTACAGTTTTTCATCAAATggttaaaataccttttttttttttttaaatgcaaggaACAAATCATACATCTTAAGGTTGTTAATGGCTTTTATAACTAATagttcatttatatttgtcatTCACTTTTTAAGTGCACTTTGTTTCACTTCTTGGGTAGAGTGTCCATGTACTTGCATATGATTGACAGCATCACTTCATCAGCTCCTGCTCCAATAGACATTAACCTAGAGTCC
>XM_043217886.1
CTTCCGTAAGGTGTCGTGGCGCTGGTGGAGTGCGAAGGCGAAAGTACAGTTACTCTAAAGAGGAAGATAAGGAAATATTTGTGACATTACGTTTAAACTTCAGTGGTCGTATATCATATAAAGGTTTCCGGCTGATAATGAGGCGCGCAGGTTTGGGTGAGGGCGGTCCTCCAGGCAATTACGTTGCAAGTGGATACAGCGTGTATGAGGAGGAGAACGAACATCTACAGGAGGGACTGAGAGCTAAAGTACATGCGCTTAAACATCTTTCAATTGACATCGGAAATGAAGTCAAGTACCAGAATAAAATGTTGGGCGAAATGGACTCGGACTTTGACTCCACTGGAGGTTTGCTGGGAGCCACCATCGGTAGATTGAAGCTCCTCTCCAGGGGAAGCCAAACCAAGGTGTACTGCTACATGCTGCTGTTTGCCCTGTTCGTGTTTCTGGTCCTGTACTGGGTGATCAAACTGAGGTGATCGTAGTGCTGACGAGACTCTTCGGGACCTTTTATTCGTGCCATGCTCATTTGGGGTAGAGGGTCAGATTCCTCAGAGATGATGAAGTCTGAGGTTGCTGAGGAATACGAGAGCGCTTTCTTTCCATTGGACAAGAAGTTGATCCATTGATTGACAATGTGCAATATGAGACAAAAATATGTCCTAACCCAACATTAGTGTCCCCCGAGGGGAAGGGATGGTTCTAGTTGTCTAATACCggccacaaaaatattttgaaagattaACGACAtgcatcttctttttttcagaaacaatAATGACCTTTGTTTAATGGTTCTGTTCTTTTTaggagaaaaataattattttcagtgcTATAAATGTGTGCTAATTTATACTTTCTATAAGGATAAAGTTAAATGCGTTTAAAAGAGTGGCACACAGCAGCACAGTAGTCCTTTAATCGTATAGTTGAAAATTCAGGTTATGACAGCTGTTTAGCTGGATGGGGTGCAAACAAAATAAGACCTATTCATCCTTTACGTTTCCTTTGTTTTACTGTGCAAATCTACATGGCATCTTTAAAAGAGTTGCCACAAAATTGTGTGAATACAGTGTTCAAAGGGGTGCTCTTCAGACTGTGAAAACTGTACATGAGTTTTTGTGCAATGCAGATGTGTAATATCCATATCAGAAACAACCCCAGAATTCTGTGTACTTCAGAAATGTGTTAATTTTTaggttcaatttttttttttttgctctctgtttaaaataatgcatggtTAAAGTTTTTAGAAAccaatttgtaaataaatgtaatttctgagagaattattacatataaaattcCTTTATGTTGTCATGTTTTCATATATCCCATTTACGATTGTCACGAATCTTTTCGAGCTGCTTAagaattaaaactttatttcttttcatgcatattaacaaacatttattaaaactaatcaCAATTTACATATGTTACATATTACTACAGTTTTTCATCAAATggttaaaataccttttttttttttttaaatgcaaggaACAAAT

Function

symbol description
bet1 Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi trans cisterna. Orthologous to human BET1 (Bet1 golgi vesicular membrane trafficking protein).

NR:

description
BET1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195513 True 1676 TUCP 0.37 4 12435779 12438071
XM_043217886.1 False 1518 mRNA 0.38 4 12435951 12438085

Neighbor

gene id symbol gene type direction distance location
tfpi2 tfpi2,LOC107722157,LOC107670228,LOC107731825,LOC107667768,LOC107558578 coding downstream 12660 12420878 ~ 12423119 (-)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776,LOC107567974 coding downstream 20028 12380444 ~ 12415751 (-)
LOC122323778 LOC107567967,LOC107722131,LOC107670237 coding downstream 236461 12197875 ~ 12199318 (-)
LOC122323777 NA coding downstream 243474 12191038 ~ 12192305 (-)
efcab1 efcab1 coding downstream 244878 12189282 ~ 12190901 (-)
sgce sgce,LOC107731676,LOC107722147,LOC107665667,LOC107669779 coding upstream 59143 12497228 ~ 12508605 (-)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 120826 12558911 ~ 12568503 (-)
LOC122323727 slc25a13,LOC107665658,LOC107593530,LOC107731765 coding upstream 181698 12619783 ~ 12657157 (-)
dlx5a dlx5,dlx5a,LOC107670186,LOC107591663,LOC107665662,LOC107736572 coding upstream 265507 12703592 ~ 12705647 (-)
chrac1 chrac1,LOC107580926,LOC107591666,LOC107669723,LOC107722130 coding upstream 288427 12726512 ~ 12727814 (-)
G132398 NA non-coding downstream 56628 12333451 ~ 12379151 (-)
G132363 NA non-coding downstream 186356 12248381 ~ 12249423 (-)
G132334 LOC107669930,LOC107722137,LOC107706594,LOC107566770,LOC107558579,LOC107655760 non-coding downstream 213826 12121405 ~ 12221953 (-)
G132329 zmym4 non-coding downstream 253636 12159701 ~ 12182143 (-)
G132355 NA non-coding downstream 254412 12178945 ~ 12181367 (-)
G132417 NA non-coding upstream 14199 12452284 ~ 12452705 (-)
G132428 NA non-coding upstream 30835 12468920 ~ 12471830 (-)
G132429 NA non-coding upstream 45531 12483616 ~ 12484168 (-)
G132436 NA non-coding upstream 72901 12510986 ~ 12511332 (-)
G132437 ppp1r9a,LOC107722146,LOC107669756,LOC107731638 non-coding upstream 75032 12513117 ~ 12525593 (-)
G132292 NA other downstream 602872 11832173 ~ 11832907 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other downstream 679341 11709923 ~ 11756438 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1264866 11170270 ~ 11170913 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other downstream 1690650 10740374 ~ 10745129 (-)
ctnnal1 NA other downstream 2073252 10315621 ~ 10362527 (-)
sem1 NA other upstream 159689 12597774 ~ 12669215 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other upstream 589732 13027817 ~ 13029349 (-)
G132733 NA other upstream 846446 13284531 ~ 13285461 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other upstream 1056745 13494830 ~ 13502370 (-)
G132785 NA other upstream 1069579 13507664 ~ 13508453 (-)

Expression


Co-expression Network