CI01000001_05279884_05287123


Basic Information

Item Value
gene id CI01000001_05279884_05287123
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5279837 ~ 5287698 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05279884_05287123.mRNA
TTTTAAAGACAGCTGTCCATTCAGTCACATGAAAGCAGACTGGAGTGATGAATCAAGAGGAAGAGGAGGGGGATGTGTTAGGAAGCGAAGGATCGGAGGTCCTCCATTGTTCTCCATCTCGGTTCAACATCAACCGAGTGTTTTCACAGATTAGCATCACAGGATTATATCAGACTTCACAGTACAAAGTAAGAGCTATAGTTGGAGGGTGGTGGCAATTTGAGAGCAGTAAGCAAACTGTAAGGGGGCAGCAAGGTCTTGATGTACCTCATGACAAGCGGATAGTCAACAGGCCGATAGTCATTGATGCTGGACTTCTTCGACACAGGGACGACGTGATGGCTTTGAGGCACGTTGGGACGAAAGTCAAAATTATGATATACATCAGTCATTTGTTTGTAATTCCAACCACACTTGTCGCTTTGTACTCTGGGGTTAAAGAGAGAGGTGTCATAAAGAGGACTGAGGACACTGCTGTTCTGTCCCAGCCATTCAAACGGCACAACTGGCATTCTTGGCTCACCCGCTGGACCGGAGAAAGCTGCTCAACCCTTTCTCAGATACAAGAGGGAGAACCAGACTACCTTATCTTCTGTTCAAAATCAACAGAATTAATGAGAGAAGAAAAAGATCATCCATATGTCTCACCACAATCATTCATAATTAACTTCTAACCATGACACATGTTGTCCATATTTTTATGAATGAAGAAACGGTCTAAACTACTTTATCTGGCAAAAGGTCACTCTATTCATGAAAACGACCCACAAGAAAGAACATTATAACCTAATTTTACCAGACGTATGTCAATGTTACAAGAATGTCCTATTAAAACAGGTGGATGAATTAGACTGATTGGAACAGTAGAAGATAAACACCACTAAAAAAAACACTTGAAATTTGGATAATTGCATTTAAATCTTTGACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05279884_05287123.mRNA False 930 mRNA 0.41 3 5279837 5287379

Neighbor

gene id symbol gene type direction distance location
CI01000001_05223340_05229184 IDH3G coding upstream 50178 5223340 ~ 5229659 (+)
CI01000001_05075984_05079729 NA coding upstream 200106 5075934 ~ 5079731 (+)
CI01000001_05071017_05075175 NA coding upstream 204084 5069303 ~ 5075753 (+)
CI01000001_05051664_05059659 MFSD4B coding upstream 219897 5051529 ~ 5059940 (+)
CI01000001_04993860_04998535 NA coding upstream 281076 4993860 ~ 4998761 (+)
CI01000001_05365373_05384192 MYH7B, MYH7BA, MYH7BB coding downstream 77783 5365162 ~ 5384238 (+)
CI01000001_05401665_05402500 EMP3B, EMP3 coding downstream 114286 5401665 ~ 5402771 (+)
CI01000001_05427300_05427801 NA coding downstream 139853 5427232 ~ 5427818 (+)
CI01000001_05478200_05480124 NA coding downstream 190821 5478200 ~ 5480504 (+)
CI01000001_05487409_05494726 NA coding downstream 199923 5487302 ~ 5495336 (+)
G15846 NA non-coding upstream 65585 5212269 ~ 5214252 (+)
G15879 NA non-coding upstream 82082 5197546 ~ 5197755 (+)
G15878 NA non-coding upstream 82596 5197025 ~ 5197241 (+)
G15877 NA non-coding upstream 82909 5196661 ~ 5196928 (+)
G15875 NA non-coding upstream 96477 5183072 ~ 5183360 (+)
G15839 NA non-coding downstream 30107 5317486 ~ 5317993 (+)
G15854 NA non-coding downstream 49741 5337120 ~ 5341892 (+)
G15911 NA non-coding downstream 70251 5357630 ~ 5357902 (+)
G15915 NA non-coding downstream 124104 5411483 ~ 5411690 (+)
G15948 NA non-coding downstream 134924 5422303 ~ 5422528 (+)
G15794 NA other upstream 215133 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 1658386 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3608833 1667762 ~ 1671167 (+)
G13051 NA other upstream 4234685 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4787780 483853 ~ 488825 (+)
G15995 NA other downstream 424506 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2245193 7531541 ~ 7540586 (+)
G17234 NA other downstream 2744745 8032124 ~ 8032483 (+)
G17353 NA other downstream 3928643 9216022 ~ 9228859 (+)
G17354 NA other downstream 3947084 9234463 ~ 9240677 (+)
CI01000001_05270301_05279405 AVPR2AB coding upstream 5942 5270301 ~ 5280807 (+)
G15895 NA non-coding upstream 3026 5283460 ~ 5283723 (+)

Expression


Co-expression Network