sem1


Basic Information

Item Value
gene id sem1
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12597774 ~ 12669215 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU195817
CGCACGTCATTACGTTGAGCGCCCGTGAGAAGCTGCGTTGAACCGCTGGATCAGTAGCACAACATGTCAGAGAAGAAACAAACAGTGGATTTGGGACTCTTGGAGGAGGATGATGAATTTGAAGAATTCCCAGCAGAGGACTGGACGGGCCTGGATGAAGATGAGGACGCTCACGTTTGGGAAGATAACTGGGATGATGACAACGTAGAGGACGACTTTTCTAATCAGCTGAGATCGGAGCTTGAAAAACATGGATACAAGATGGAAACCTCTTAACATTGGACTGCTTGAGCTGAAAAAGGATTTTTCCACATTTGAATATTGTCAGTTTGTTCTGTCAACAGAAAATATGAGTTCTCTCATTACTTCTGTAAGAAGCCCGGGTCAGCTGAAACTGATATCAATATTTTTCCCCTCCCTTATGTacaatttttgttaataattgtgATAATAAAGAATTGTTTTCCCTATTCcgatttatacatttctttcatatatG
>TU195818
CGCACGTCATTACGTTGAGCGCCCGTGAGAAGCTGCGTTGAACCGCTGGATCAGTAGCACAACATGTCAGAGAAGAAACAAACAGTGGATTTGGGACTCTTGGAGGAGGATGATGAATTTGAAGAATTCCCAGCAGAGGACTGGACGGGCCTGGATGAAGATGAGGACGCTCACGTTTGGGAAGATAACTGGGATGATGACAACGTAGAGGACGACTTTTCTAATCAGCTGAGATCGGAGCTTGAAAAACATGGATACAAGATGGAAACCTCTTAACATTGGACTGCTTGAGCTGAAAAAGGATTTTTCCACATTTGAATATTGTCAGTTTGTTCTGTCAACAGAAAATATGAGTTCTCTCATTACTTCTGTAAGAAGCCCGGGTCAGCTGAAACTGATATCAATATTTTTCCCCTCCCTTATGTacaatttttgttaataattgtgATAATAAAGAATTGTTTTCCCTAaaaaaaaaaaaaaaa
>TU195819
CGCACGTCATTACGTTGAGCGCCCGTGAGAAGCTGCGTTGAACCGCTGGATCAGTAGCACAACATGTCAGAGAAGAAACAAACAGTGGATTTGGGACTCTTGGAGGAGGATGATGAATTTGAAGAATTCCCAGCAGAGGACTGGACGGGCCTGGATGAAGATGAGGACGCTCACGTTTGGGAAGATAACTGGGATGATGACAACGTAGAGGACGACTTTTCTAATCAGCTGAGATCGGAGCTTGAAAAACATGGATACAAGATGGAAACCTCTTAACATTGGACTGCTTGAGCTGAAAAAGGATTTTTCCACATTTGAATATTGTCAGTTTGTTCTGTCAACAGAAAATATGAGTTCTCTCATTACTTCTGTAAGAAGCCCGGGTCAGCTGAAACTGATATCAATATTTTTCCCCTCCCTTATGTacaatttttgttaataattgtgATAATAAAGAATTGTTTTCCCTAaaaaaaaaaaaaaag
>XM_043217194.1
GGTCACTGTTTTGCGCATGCGCACGTCATTACGTTGAGCGCCCGTGAGAAGCTGCGTTGAACCGCTGGATCAGTAGCACAACATGTCAGAGAAGAAACAAACAGTGGATTTGGGACTCTTGGAGGAGGATGATGAATTTGAAGAATTCCCAGCAGAGGACTGGACGGGCCTGGATGAAGATGAGGACGCTCACGTTTGGGAAGATAACTGGGATGATGACAACGTAGAGGACGACTTTTCTAATCAGCTGAGATCGGAGCTTGAAAAACATGGATACAAGATGGAAACCTCTTAACATTGGACTGCTTGAGCTGAAAAAGGATTTTTCCACATTTGAATATTGTCAGTTTGTTCTGTCAACAGAAAATATGAGTTCTCTCATTACTTCTGTAAGAAGCCCGGGTCAGCTGAAACTGATATCAATATTTTTCCCCTCCCTTATGTacaatttttgttaataattgtgATAATAAAGAATTGTTTTCCCTA

Function

NR:

description
PREDICTED: 26S proteasome complex subunit DSS1

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195817 True 499 TUCP 0.41 3 12667264 12669196
TU195818 False 485 TUCP 0.41 4 12643964 12669196
TU195819 False 485 TUCP 0.41 4 12597774 12669196
XM_043217194.1 False 489 mRNA 0.42 3 12667293 12669215

Neighbor

gene id symbol gene type direction distance location
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding downstream 29271 12558911 ~ 12568503 (-)
sgce sgce,LOC107731676,LOC107722147,LOC107665667,LOC107669779 coding downstream 89169 12497228 ~ 12508605 (-)
tfpi2 tfpi2,LOC107722157,LOC107670228,LOC107731825,LOC107667768,LOC107558578 coding downstream 174655 12420878 ~ 12423119 (-)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776,LOC107567974 coding downstream 182023 12380444 ~ 12415751 (-)
LOC122323778 LOC107567967,LOC107722131,LOC107670237 coding downstream 398456 12197875 ~ 12199318 (-)
dlx5a dlx5,dlx5a,LOC107670186,LOC107591663,LOC107665662,LOC107736572 coding upstream 34377 12703592 ~ 12705647 (-)
chrac1 chrac1,LOC107580926,LOC107591666,LOC107669723,LOC107722130 coding upstream 57297 12726512 ~ 12727814 (-)
gnrhr1 LOC107722165,LOC107593587,LOC107670170,LOC107731798,LOC107591668,LOC107665657 coding upstream 109836 12779051 ~ 12786005 (-)
trioa LOC107696598,LOC107706171 coding upstream 193610 12862825 ~ 12942047 (-)
si:ch211-191i18.4 NA coding upstream 356881 13026096 ~ 13027361 (-)
G132579 NA non-coding downstream 16957 12577995 ~ 12580817 (-)
G132580 NA non-coding downstream 24233 12570941 ~ 12573541 (-)
G132455 NA non-coding downstream 41129 12556258 ~ 12556645 (-)
G132445 NA non-coding downstream 46269 12548529 ~ 12551505 (-)
G132444 NA non-coding downstream 49604 12546492 ~ 12548170 (-)
G132602 NA non-coding upstream 18588 12687803 ~ 12701078 (-)
G132603 dlx6,LOC107591662,LOC107665660,LOC107665661,LOC107670195,LOC107731755 non-coding upstream 30707 12699922 ~ 12722428 (-)
G132627 NA non-coding upstream 122342 12791557 ~ 12829799 (-)
G132637 NA non-coding upstream 185839 12855054 ~ 12857406 (-)
G132642 NA non-coding upstream 191001 12860216 ~ 12930455 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other downstream 159689 12435779 ~ 12438085 (-)
G132292 NA other downstream 764867 11832173 ~ 11832907 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other downstream 841336 11709923 ~ 11756438 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1426861 11170270 ~ 11170913 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other downstream 1852645 10740374 ~ 10745129 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other upstream 358602 13027817 ~ 13029349 (-)
G132733 NA other upstream 615316 13284531 ~ 13285461 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other upstream 825615 13494830 ~ 13502370 (-)
G132785 NA other upstream 838449 13507664 ~ 13508453 (-)
G133132 NA other upstream 2114973 14784188 ~ 14784423 (-)

Expression


Co-expression Network