G133109 (ppce,LOC107602379,LOC107688393,LOC107706142,LOC107592053,LOC107654745,LOC107710331)


Basic Information

Item Value
gene id G133109
gene name ppce,LOC107602379,LOC107688393,LOC107706142,LOC107592053,LOC107654745,LOC107710331
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15196057 ~ 15281004 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU196596
AAACCACCTTTAATGATCACTGCTGTGctgaaacaaaagtaaaaatcaagttgtttattattgtaaaaaccACCTTTAATGATCACTGCTGTGctgaaacaaaagtaaaaatcaagttgctccaaaaacaaaaccattttagTACCTTCCAtggaaatataaaacatttacttactCCCCAAATGCCCTTCTCCTCTCTCAGTCCCTGCATAAGCGCAGCCAAATATCTTTAGAAATCACTAGATAATTTGTGCTCTTGTCGTGAAATCGCTAATTCTGTTTACTGCATCTCTCTCTTATTCCCTCCAGCTGAGGTTCAGCGTGTGAGCTATGAAGGAGAAGATGTGCGTGTCCTCCAGGATGGCTTTAGCGGTGGGTTTCCCGGCTCCATGTCCGCTGCGCGTGTCCACCCTGACCATCAGCGGCCGGGTTTGCCCGGGGCTGCGGCCCACGCCGTGCTGGAGAGTGGCCACGTACTTCAGAGTGTGCAGGGGAACCACGCGGTCATCGTGATCGGCCGTCAGCAGTAGCATCGCAGGGTAAGGGGTCCCATCTCGAGGGGCCTGAGGAAGGTTGTGGAGAGGAGAGTACCTGTGGTGGGAAAGGTCAGA

Function

NR:

description
PREDICTED: prolyl endopeptidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196596 True 611 lncRNA 0.49 2 15196057 15281004

Neighbor

gene id symbol gene type direction distance location
cdca8 cdca8,LOC107591982,LOC107592949,LOC107654740,LOC107754257,LOC107688370 coding upstream 234487 14958607 ~ 14961570 (+)
cldn35 LOC107591984,LOC107654683,LOC107592950,LOC107754258,LOC108430542 coding upstream 239112 14953377 ~ 14956945 (+)
ago4 LOC106511154,LOC107591980 coding upstream 244385 14935159 ~ 14951672 (+)
tfap2e tfap2e,LOC107654734,LOC107688421,LOC107706245,LOC107754262 coding upstream 289350 14897549 ~ 14906707 (+)
ncdn ncdn,LOC107706243,LOC107654732,LOC107754263,LOC107688377,LOC107592947,LOC107585609 coding upstream 299613 14892389 ~ 14896444 (+)
LOC122324124 LOC107706255,LOC107654747,LOC107591987,LOC107688367,LOC107710332 coding downstream 32853 15313857 ~ 15319770 (+)
crybg2 LOC107654746,LOC107706257,LOC107592054 coding downstream 46663 15327667 ~ 15350247 (+)
sgo1 LOC107654748,LOC107706259,LOC107688364,LOC107592057,LOC107578328,LOC107602351,LOC107710334 coding downstream 90300 15371304 ~ 15376482 (+)
trnap-agg_21 NA coding downstream 98466 15379470 ~ 15379541 (+)
LOC122324102 LOC107654690,LOC107706166,LOC107592089,LOC107602352 coding downstream 99633 15380637 ~ 15384405 (+)
LOC122324050 NA non-coding upstream 160635 15022275 ~ 15035422 (+)
G133068 NA non-coding upstream 438081 14757624 ~ 14757976 (+)
G132916 NA non-coding upstream 613641 14175839 ~ 14582416 (+)
G132913 trps1,LOC107706219,LOC107592043,LOC107754280,LOC107696539,LOC107562946 non-coding upstream 1027573 14168095 ~ 14168484 (+)
G132910 NA non-coding upstream 1089796 14097276 ~ 14106261 (+)
G133129 NA non-coding downstream 93496 15374500 ~ 15378019 (+)
G133253 NA non-coding downstream 179334 15460338 ~ 15460706 (+)
G133256 NA non-coding downstream 200994 15481998 ~ 15483517 (+)
G133265 NA non-coding downstream 267840 15548844 ~ 15549137 (+)
G133276 NA non-coding downstream 302201 15583205 ~ 15606585 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other upstream 3491 15078454 ~ 15192566 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other upstream 358088 14834601 ~ 14837969 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 1859308 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 2170031 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 2770979 12423290 ~ 12425078 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 27723 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 74604 15355608 ~ 15361845 (+)
cckb cck,LOC107592091,LOC107654691,LOC107706167,LOC107688363 other downstream 140131 15421135 ~ 15424497 (+)
G133266 LOC107748647,LOC107591995 other downstream 288660 15569664 ~ 15577981 (+)
aste1b aste1,LOC107654763,LOC107688353,LOC107710346,LOC107580865 other downstream 339255 15620259 ~ 15626187 (+)

Expression


Co-expression Network