zgc:114119 (LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983)


Basic Information

Item Value
gene id zgc:114119
gene name LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14887528 ~ 14891918 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU196661
gatgAAACGAGTGATGGCTAATGCTGCTATGTTTGAAATTTGACGTGAGTGGAGAAGCCCCACATTTCTTCAGCAGTTGTTACTGTTATCCCCCAGAAGTAAGCTACTTTCGGACCAGGAGCAACACCGATAAGCGCAATGTCTGCTCCGCTCCCTCAGAAGGGGCTCGGTCCGGGTATGCCGGTCATGCCcccccagcagcagcagcagcagcccgCGCCGACACACATGCCTCCTGGCCTCGCGCAGCCCGGGATGCCCCCACAAGGTGCCCTGCGGGAAATCTCTCCCG
>XM_043217203.1
CGTaacacaggaaacaggaaatgatgAAACGAGTGATGGCTAATGCTGCTATGTTTGAAATTTGACGTGAGTGGAGAAGCCCCACATTTCTTCAGCAGTTGTTACTGTTATCCCCCAGAAGTAAGCTACTTTCGGACCAGGAGCAACACCGATAAGCGCAATGTCTGCTCCGCTCCCTCAGAAGGGGCTCGGTCCGGGTATGCCGGTCATGCCcccccagcagcagcagcagcagcccgCGCCGACACACATGCCTCCTGGCCTCGCGCAGCCCGGGATGCCCCCACAAGGTGCCCTGCGGGAAATCTCTCCCGTTTACCTGCCgccttttaaaaaagtttaccTGTGCCGCATCGGCCAGGAGACTGTCCAGGACATCGTCACGCGCacacaactatatatatatatatataGTTTGTTCCAGCTTCCTAACGGTGTGACGCAGAGTCAGGCAGCATATCAGGACCGCTTTGGGAAGCTGCAGGAGCATCTGCGTCAGCTGACACTGCTCTTCCGGAAGCTGCGTCTGTTATACGAACGCTGTGTAGAAATGACACCTGACCTCCAGGAGTCTCCAGCTGAGCTGGTTCCTTATGTGGGGGAAGAGACGACATCTGTGAGAGTGGAGCCCTGCAGCCCAGCTGTCATTCAGGAGAGGCAGGAGGTTCTAGAGAAAGTGAGGCAGAAGAACCAGGAGATGAAGGTGCTAATGGACCAGATGAGGAACCTCCTGTGGGACGTCAATGCCATGCTCACCATGCGAAAATGACAGCGGTACGTTTCCTAGCAAACATCGGCCCATCTTCCGTCAGCCCTCTTCTACGGTCTTCTCTCTTTCACGCGTTCAGACGCTTTCACACGAACGGCAGCCTGCCTTTCATTCACTGCTTGTGCAAACGCCACATAATATTTCATCTTGACAAACGAGCTCAGGCTTGGCAGCTCTTTGTGGTCCTGCCTCATTTCCAGTGTTAAATCCCAACGCTCTGATTAATAAGCGCTTCATCAAAGCATCCGAGTTAGCGTCAGAAGCGGGAAGCAGCGTAACAGCCACGCAGGTGATGTTAGCTAGCCATGTTGCTGGCGTGATGAACGAGCACCGCGGACTGAGCTTTGTAAATATTAGTGCCTGCACTGTGGTCTTTTTTTGCTCATTGAACTGTGTGATGTGTTTCACACCGTTGCTCCTCAGCAAATATGTACTCAGGTAGAGTGTGTGTTTCCCTGAGCTCTGCATTACACTCCTGATATTGGAAAGGAttgactgggaaaaaaaaaacgaatgaatTGCAGGATGATAGTTTTTGTAAGCTAAAGActtttgtacaaaataaaaaaaaaaaaaaagaaaaa

Function

NR:

description
mediator of RNA polymerase II transcription subunit 30-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196661 False 292 TUCP 0.59 2 14891427 14891896
XM_043217203.1 True 1353 mRNA 0.50 6 14887528 14891918

Neighbor

gene id symbol gene type direction distance location
sdc2 LOC107654728,LOC107591973,LOC107706240,LOC107592944,LOC107688380,LOC107754266 coding downstream 57013 14806739 ~ 14830515 (-)
angpt1 angpt1,LOC107654726,LOC107706239,LOC107696520,LOC107754267 coding downstream 183980 14655276 ~ 14703548 (-)
abrab abrab,LOC107654682,LOC107706162,LOC107592087 coding downstream 240785 14643684 ~ 14646743 (-)
samd12 LOC107706238,LOC107591970,LOC107592942,LOC107654725 coding downstream 246014 14578962 ~ 14641514 (-)
ext1b extl1,ext1b,LOC107654722,LOC107754269,LOC107696533,LOC107592940,LOC101464589 coding downstream 326242 14495547 ~ 14561286 (-)
psmb2 psmb2,LOC107592948,LOC107688376,LOC107591978 coding upstream 15709 14907627 ~ 14915399 (-)
LOC122323256 LOC107706246,LOC107654736,LOC107754261,LOC107688374,LOC107591981 coding upstream 29743 14921661 ~ 14924110 (-)
LOC122323565 clspn,LOC107706248,LOC107654737,LOC107754255 coding upstream 33800 14925718 ~ 14935069 (-)
c19h1orf109 LOC107688373,LOC107754259,LOC107592951,LOC107654741,LOC107591985 coding upstream 64982 14956900 ~ 14958500 (-)
LOC122323517 ppce,LOC107654745,LOC107710331,LOC107602379,LOC108259106 coding upstream 388511 15280429 ~ 15292601 (-)
G133143 NA non-coding downstream 49575 14836460 ~ 14837953 (-)
G133144 NA non-coding downstream 51667 14835452 ~ 14835861 (-)
G133016 rbm24a,LOC107696536,LOC107592929,LOC107706227,LOC107754275,LOC107654717,LOC107591968 non-coding downstream 458706 14403518 ~ 14428822 (-)
LOC122324095 NA non-coding downstream 614810 14268267 ~ 14272718 (-)
G132852 NA non-coding downstream 1326069 13561128 ~ 13561459 (-)
G133190 LOC107654743,LOC107706254 non-coding upstream 298887 15190805 ~ 15277403 (-)
G133226 NA non-coding upstream 491929 15383847 ~ 15384115 (-)
G133313 NA non-coding upstream 522057 15413975 ~ 15424498 (-)
G133315 NA non-coding upstream 588414 15480332 ~ 15481202 (-)
G133361 NA non-coding upstream 733407 15625325 ~ 15626280 (-)
G133132 NA other downstream 103105 14784188 ~ 14784423 (-)
G132785 NA other downstream 1379075 13507664 ~ 13508453 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other downstream 1385158 13494830 ~ 13502370 (-)
G132733 NA other downstream 1602067 13284531 ~ 13285461 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other downstream 1858179 13027817 ~ 13029349 (-)
G133217 NA other upstream 474516 15366434 ~ 15369736 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other upstream 752944 15644862 ~ 15648579 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other upstream 768001 15659919 ~ 15660720 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other upstream 845029 15736947 ~ 15740329 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other upstream 1030305 15922223 ~ 15924285 (-)

Expression


Co-expression Network