LOC122323308 (LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392)


Basic Information

Item Value
gene id LOC122323308
gene name LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15644862 ~ 15648579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU196948
CGATCCCCAGGCATTCCGGCCAATCAGGAGACAGAACAGGTGCGCTCACGATAGTTTCGGAGGTGGAATCTCAGTGCTCTTGTAAACTGCGACGACAGTATAAAGTCTTTCACGTAACTTCAAATTTTGCGTGGCGTTTTCAGAACCTCCTCCAGGTGATGTTGGGCAAAGGATGATGTTACGTTTTCTCGCAGACAAAGATATCCATTCATTCGAGTTATGCGCAAAAACGCGTCTCGGCGATTGAAGTCTTCGTGTACGCGGGAGTGAAAGATGATTTTCGCGCACTGAGATTTCTTCTGAGGATTCGGCGTCTGTGTTTTCTCAGCACACCTTTCATTTAGAGGAACCTCGGGCTGCGTTTATCTTGTTCTCATCGTTTTTGCGCAGttttaacaatGACTGAGAAGATAGCTCCCTGGTGGAGGTCCTTCGTGGGCAAGAGGAGAAAGGCAGCCAGAGAGTCTGCGGTGACGCTGGAACAGGACCTCCGTAACCAGGCTTCGGCGGGGTCCACGCAGCACCCCTCCGCCGAGCCGGACCAACGGCTCACTTCGGCGACGCGACCGGCGAAAGAAGAGGCCAACTGCTTACCGAGCGACGAAACGTACGACGACTCCGCCGTTCAGCCGTATTTCAACGAGAGCTCCAATCGCCGCAGCCTCACCGTGTCCCGCTCCGGACGCTTCAAAGAGAAGCGGAAGACGCGCGCCAGTCTTCCGCAGAACCACGGAGACGACGGGAAATCAGCCGACGTCCAGTCGACGCGCTGATCGCCTCCGCGGTTCGGTAGAGCGCTGAGTACGGCACTACCTCCGTTCTGACACTGCTGAACTCGATTGGACTCGCGAACGCACTTATATGAAGTTATGAGGATAGACTTTTGGAGTAAGTTATCCATATCacagaagctttattttttccGATGCTGGAAATAATGTCATTTCCctactgaaacaaaaaaaaaaaaaaaaacctagccAGGCTGGTCTTTACGGGTTTTAAAGGGGTTTTGGGCACTTTACAATAACCGGAAAACCAGCTGGGTGACCAGCTAGACCAGCCTTAACCAGCAAaccatgtttttagttttattttttttggttattggACATTCAGTACAATGATTTTCGTGAAGGATGCAACATAATGTTTTGGTTGTCATACATAATTTGCACTGTTCTGAGGtgttaatgcaatattttatgaAGGACTGTACATTAGAAGGATTCAGcagcaaatatttttaatggttaGCAATGTGCTGCGAGCATTGCCTTATCATGACTTGTTTTGTAACGCTTGTGCATGCATGCCACGGATTTTTAAAGGGGTTAGGGTGGTGGTCCTATCCGTCCAGAATCAGATTATTAATGTATATGCCATCCTACGCATCAGAAATCAAAGCCACGAGTTTTCATGtgtagtttgttttattgactCCAGGACACCTTGATAGTAGTGATTCGTTCTCCTACCGCAAACGTAGTGCTGCATTTACGTTAGACAAACCAAAGATTCTACTCTTATATCGTTTAGTTAACAGTTAAAGTCAAGAAAAGCAATTTAACTAAACTATAGGCTGTTAGTTTAGCAAACAGTGTTTACAGTAGATATATGAGTATATTAAGACATGAGTTGAACTTAGTTACTGTTCATTCATCCTAAATTCGAATAGATCCTGATAattggtttttaaaaaactgttcaaaCTATGAGatttaatctgttttttgttttttttttgcgtgcaGCTGGTTGTTAGGGAATAGGCCTATGTCATATGTTCGGGTCCTTTGAGTAGGGAAGAGATGCACATGCAGATTTGAAATTTGTGTCCACAATGAAGATTTAAACAAGATTTAATTTCTATCAGGAGAAAGAGATGCACTGCACTCTTATACGTTTGTTTGCTAAATCTAGCTTGGGAAGGAAGTGTTACTTCATcggattttaatattttccatttaaggCATCCATCTGTGCATGTGCCGAGCTGTTGTTGCCCCTGAATGTGCTTACGTGTATGTGAGTGTTTGTTATGGGTGGGGTGTACAGACAAGCAATAGGTCATTATTAGAGTTACAGTATTTAAAACTCCATCAGTGTGTGCTAATGCTCGTCACCTCGCCTGAGGCTGTCATCTTTAACCTCATCAGCCCTGTATCACAACATTCCTTACTCTTAGAAGACAAGTTTCTCAGAGAGCCAGAATGACTGCACTGTCTTTCCCTAATAGGGTGGAAATATTAGGCTAGATCATTTGTATGGACTTACAAATGCTTTTCTCAGCAGAGAGTATACAAGGCTTGCTGAATCATGACTGCACTGTTCtcactgaataaaacacattttagcatTGTTGTTTGACACActtgatagtttttttttgttttagcagtagatgattttatgttttcactCAATGAAATATTCAGATACTATCCTTGACCCTATTACTGATTAAATCTGGTTTGGAGGTCATCTTTTATTGGCCATGCCTCTtttctctgcacacacacacacaaacgaagcgttgtaaataaaacaaaacaaaaacctacCACTAGAGAGCGATCTGGTCGCGCGCAGCATAGAGTACAGTACAGAGCCACCTGAAGCACAGATGACTAGATGTTAACAACTTACAAAAGCTttagcttttaatttaattttcattacagAAATTGAACACACGTTCT
>XM_043217048.1
TAGTTTCGGAGGTGGAATCTCAGTGCTCTTGTAAACTGCGACGACAGTATAAAGTCTTTCACGTAACTTCAAATTTTGCGTGGCGTTTTCAGAACCTCCTCCAGGTGATGTTGGGCAAAGGATGATGTTACGTTTTCTCGCAGACAAAGATATCCATTCATTCGAGTTATGCGCAAAAACGCGTCTCGGCGATTGAAGTCTTCGTGTACGCGGGAGTGAAAGATGATTTTCGCGCACTGAGATTTCTTCTGAGGATTCGGCGTCTGTGTTTTCTCAGCACACCTTTCATTTAGAGGAACCTCGGGCTGCGTTTATCTTGTTCTCATCGTTTTTGCGCAGttttaacaatGACTGAGAAGATAGCTCCCTGGTGGAGGTCCTTCGTGGGCAAGAGGAGAAAGGCAGCCAGAGAGTCTGCGGTGACGCTGGAACAGGACCTCCGTAACCAGGCTTCGGCGGGGTCCACGCAGCACCCCTCCGCCGAGCCGGACCAACGGCTCACTTCGGCGACGCGACCGGCGAAAGAAGAGGCCAACTGCTTACCGAGCGACGAAACGTACGACGACTCCGCCGTTCAGCCGTATTTCAACGAGAGCTCCAATCGCCGCAGCCTCACCGTGTCCCGCTCCGGACGCTTCAAAGAGAAGCGGAAGACGCGCGCCAGTCTTCCGCAGAACCACGGAGACGACGGGAAATCAGCCGACGTCCAGTCGACGCGCTGATCGCCTCCGCGGTTCGGTAGAGCGCTGAGTACGGCACTACCTCCGTTCTGACACTGCTGAACTCGATTGGACTCGCGAACGCACTTATATGAAGTTATGAGGATAGACTTTTGGAGTAAGTTATCCATATCacagaagctttattttttccGATGCTGGAAATAATGTCATTTCCctactgaaacaaaaaaaaaaaaaaaaacctagccAGGCTGGTCTTTACGGGTTTTAAAGGGGTTTTGGGCACTTTACAATAACCGGAAAACCAGCTGGGTGACCAGCTAGACCAGCCTTAACCAGCAAaccatgtttttagttttattttttttggttattggACATTCAGTACAATGATTTTCGTGAAGGATGCAACATAATGTTTTGGTTGTCATACATAATTTGCACTGTTCTGAGGtgttaatgcaatattttatgaAGGACTGTACATTAGAAGGATTCAGcagcaaatatttttaatggttaGCAATGTGCTGCGAGCATTGCCTTATCATGACTTGTTTTGTAACGCTTGTGCATGCATGCCACGGATTTTTAAAGGGGTTAGGGTGGTGGTCCTATCCGTCCAGAATCAGATTATTAATGTATATGCCATCCTACGCATCAGAAATCAAAGCCACGAGTTTTCATGtgtagtttgttttattgactCCAGGACACCTTGATAGTAGTGATTCGTTCTCCTACCGCAAACGTAGTGCTGCATTTACGTTAGACAAACCAAAGATTCTACTCTTATATCGTTTAGTTAACAGTTAAAGTCAAGAAAAGCAATTTAACTAAACTATAGGCTGTTAGTTTAGCAAACAGTGTTTACAGTAGATATATGAGTATATTAAGACATGAGTTGAACTTAGTTACTGTTCATTCATCCTAAATTCGAATAGATCCTGATAattggtttttaaaaaactgttcaaaCTATGAGatttaatctgttttttgttttttttttgcgtgcaGCTGGTTGTTAGGGAATAGGCCTATGTCATATGTTCGGGTCCTTTGAGTAGGGAAGAGATGCACATGCAGATTTGAAATTTGTGTCCACAATGAAGATTTAAACAAGATTTAATTTCTATCAGGAGAAAGAGATGCACTGCACTCTTATACGTTTGTTTGCTAAATCTAGCTTGGGAAGGAAGTGTTACTTCATcggattttaatattttccatttaaggCATCCATCTGTGCATGTGCCGAGCTGTTGTTGCCCCTGAATGTGCTTACGTGTATGTGAGTGTTTGTTATGGGTGGGGTGTACAGACAAGCAATAGGTCATTATTAGAGTTACAGTATTTAAAACTCCATCAGTGTGTGCTAATGCTCGTCACCTCGCCTGAGGCTGTCATCTTTAACCTCATCAGCCCTGTATCACAACATTCCTTACTCTTAGAAGACAAGTTTCTCAGAGAGCCAGAATGACTGCACTGTCTTTCCCTAATAGGGTGGAAATATTAGGCTAGATCATTTGTATGGACTTACAAATGCTTTTCTCAGCAGAGAGTATACAAGGCTTGCTGAATCATGACTGCACTGTTCtcactgaataaaacacattttagcatTGTTGTTTGACACActtgatagtttttttttgttttagcagtagatgattttatgttttcactCAATGAAATATTCAGATACTATCCTTGACCCTATTACTGATTAAATCTGGTTTGGAGGTCA

Function

NR:

description
PREDICTED: proline-rich protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196948 True 2702 TUCP 0.43 2 15644862 15648579
XM_043217048.1 False 2433 mRNA 0.43 2 15645080 15648528

Neighbor

gene id symbol gene type direction distance location
wipf3 sb:cb649,wipf3,LOC107592062,LOC107602389,LOC107688351,LOC107592063,LOC107654765 coding downstream 2405 15636663 ~ 15642457 (-)
LOC122323318 NA coding downstream 40771 15598655 ~ 15604091 (-)
LOC122323317 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107563697,LOC107656642 coding downstream 48579 15588991 ~ 15596283 (-)
smarcc1b smarcc1b,LOC107748646,LOC107654761,LOC107688355,LOC107710344 coding downstream 57150 15578624 ~ 15587712 (-)
cspg5b LOC107748647,LOC107591995,LOC107710343,LOC107688356,LOC107602387,LOC107654760 coding downstream 67624 15558513 ~ 15577238 (-)
creb5a creb5a,LOC107748653,LOC107592000,LOC107710349,LOC107602393,LOC107654766,LOC107688348 coding upstream 13104 15661683 ~ 15668966 (-)
tax1bp1a tax1bp1a,LOC107654769,LOC107592002,LOC107710350,LOC107748654,LOC107688347 coding upstream 36575 15685154 ~ 15702155 (-)
snx10a LOC107592007,LOC107748666,LOC107656653,LOC107710327,LOC107688406,LOC107602366 coding upstream 186325 15834904 ~ 15839908 (-)
cbx3a cbx3a,LOC107656668,LOC107592008,LOC107688340,LOC107602402 coding upstream 195104 15843683 ~ 15847374 (-)
nfe2l3 nfe2l3,LOC107748669,LOC107656667,LOC107710360,LOC107592065,LOC107602401 coding upstream 200019 15848598 ~ 15854316 (-)
G133361 NA non-coding downstream 18582 15625325 ~ 15626280 (-)
G133315 NA non-coding downstream 163660 15480332 ~ 15481202 (-)
G133313 NA non-coding downstream 220364 15413975 ~ 15424498 (-)
G133226 NA non-coding downstream 260747 15383847 ~ 15384115 (-)
G133190 LOC107654743,LOC107706254 non-coding downstream 367459 15190805 ~ 15277403 (-)
G133370 LOC107710351,LOC107688346 non-coding upstream 23603 15672182 ~ 15673003 (-)
G133375 NA non-coding upstream 32506 15681085 ~ 15681626 (-)
G133376 NA non-coding upstream 33179 15681758 ~ 15682073 (-)
G133387 NA non-coding upstream 104851 15753430 ~ 15754646 (-)
G133392 NA non-coding upstream 110769 15759348 ~ 15759640 (-)
G133217 NA other downstream 275126 15366434 ~ 15369736 (-)
zgc:114119 LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983 other downstream 752944 14887528 ~ 14891918 (-)
G133132 NA other downstream 860439 14784188 ~ 14784423 (-)
G132785 NA other downstream 2136409 13507664 ~ 13508453 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other downstream 2142492 13494830 ~ 13502370 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other upstream 11340 15659919 ~ 15660720 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other upstream 88368 15736947 ~ 15740329 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other upstream 273644 15922223 ~ 15924285 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other upstream 632378 16280957 ~ 16508595 (-)
G133834 pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710 other upstream 1208400 16856979 ~ 16869564 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014704 NA non-coding NC_007130.7 CM002903.2 19459051 ~ 19461297 (-)
grasscarp (Ctenopharyngodon idella) G458122 NA unknown CI01000321 null 1032063 ~ 1036148 (-)