evx1 (evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093)


Basic Information

Item Value
gene id evx1
gene name evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15736947 ~ 15740329 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU196966
CCAGGGGAGCGGATTAAGAAGCTCCATGCGAGGCTTGCTGGCTTGACGGGAGAACATGCGCTAGAGATCCATTGGACAATCACATGCGGCAAATTGGGGCAAGCCAGAGATGCCTGTCTCACCCGCATACCGTCAGCTGAATACCCCCATCCCGTACCATCTTTCTCCCCGGCCTTGCTGTTGGCTTCACCTTCACACCGAGACACac
>TU196967
CGCAGACGGAGTCTACTCATACACTGTCGGGCCACGGACTTTTAAATAATCTTCGGAGAAAATAGATATTGATGACAGAGATATCATATTaactcaaatacattttaagtaggCTACACcctataaacaaaaatgtggaaatgtatttgtaaaaatgactggAGGGTAGCGCAAAAAATCTATCATAATTTATACTCTTTCATACCCA
>XM_043218293.1
ATGGACAGCGCTAAGGACACGCTGATGCGCGCCGAGGGCGGTCAGGTTGGCATACTGTCTGCCAAAGCCGTCTCCAATTCGATAGAGGCGACCGGAGAGCCCACGCGCAAGCTACCGGACAAACAGCTTAACCAGAACAGACTAAGCCCCGTGCTTTATTCGCAAAACCTGGCGGATGACGCGACAATGGGACAGCGTAGCGCGAAGTACGGAGACGTGACACTTGCTAGCAAGCCCTCCGCGCCGGACAGAGACCTGTCAGACATCCCCAACAAAGATGCCAGCAGCTCAGACGCGGAATCAGACCTCTATGAGGAAATAGATGTCAGCTGTACCCCGGAGAGCATGGATTACCCGAGTGGACAAGGACTGGCGATGGGCTCGCCGAACCACGGTAGAGACGTCGGTGTGGACAATAAGATGGGATCAGGCCCCGGTGCTCTCAACTATGGCTCTGACCAGATGCGAAGGTATCGAACAGCATTCACGAGGGAGCAGATAGCAAGGCTGGAGAAAGAGTTTTACCGTGAAAACTACGTGTCCAGGCCTCGTAGGTGCGAGTTGGCCGCTGCCTTAAATCTACCGGAAACGACAATAAAGGTTTGGTTTCAGAACCGTCGCATGAAGGACAAGAGACAGCGGTTGGCTATGACCTGGCCGCATCCTGCCGACCCCGCCTTTTACACCTATATGATGAGCCACGCTGCAGCGACCGGCAGCCTGCCCTATCCGTTTCAGTCTCACCTTCCTCTACCGTACTACTCTCCACTCAGCGGCGTGGCTGCAGGTTCAGCCTCTGCCACCGGGGGTCCGTTCTCCAATCCTCTGCGCTCGCTGGACAGTTTTCGGGTGCTGTCGCATCCATACCCGCGTCCTGAGCTGCTGTGCGCCTTCAGACACCCGTCACTGTACCCTAGCCCGGGTCATGGGCTCGGTCCCGGGGGAAGCCCGTGCTCTTGCCTTGCTTGTCACGCAGCCAGTCAGTCAAACGGGCTACCCCATAGGCCCAACAACGCAGACTTCTCCTGTTCGCCCACGACCAGGACCGAGGCCTTCCTCACGTTCTCGCCAGCAGTCATCAGCAAATCGTCTTCAGTGTCTTTGGACCAGAGGGAAGAAGTGCCACTGACCAGATAAGAAGACGGCAGAAGGCTGCGGTTTCTTCGGGTACTATCCGGATCAGCTTCGGGCACTTTGGCAGTATTTAATAAGTCATCGCATGAACTACTCAAAGCAGCTTGCACACAACGGCGATCTGCTTTAGTTACGTTTCGAAACTGTGGATGTTTTCGTGTCGGTTGAGAAACGACACGTTGCGCAGACGGAGTCTACTCATACACTGTCGGGCCACGGACTTTTAAATAATCTTCGGAGAAAATAGATATTGATGACAGAGATATCATATTaactcaaatacattttaagtaggCTACACcctataaacaaaaatgtggaaatgtatttgtaaaaatgactggAGGGTAGCGCAAAAAATCTATCATAATTTATACTCTTTCATACCCACACAAATTGACCCACATGCAGTTTCTTTCACATTAAAACGATGTTTTTCATCTAGCTTTTTAACAAGGGGATTTGTTAACCGAGCACGGTTGGCTCATTATTCCTCCTCCACGAACACCCGGTCCCGGTAGCGCACCGAAATGTGCAGATGCGAGGGAAATTAAGGAGTGATGTATTCGGAAGGGAGAAATTTTGAATGTTGAATTAATGATAATGCTGCACGCTCAGAGACTTGTCTGCCAAACCGGTAACAAGGCGCCAGGGGAGCGGATTAAGAAGCTCCATGCGAGGCTTGCTGGCTTGACGGGAGAACATGCGCTAGAGATCCATTGGACAATCACATGCGGCAAATTGGGGCAAGCCAGAGATGCCTGTCTCACCCGCATACCGTCAGCTGAATACCCCCATCCCGTACCATCTTTCTCCCCGGCCTTGCTGTTGGCTTCACCTTCACACCGAGACACacaatacatataaacacacacgacTAAAATGATAAATCAAGCATAAACGACGCTAATATTTATGGACATCCTCAGACACggcattatttattgatttattgaccgcaatgttttttacatttatgtattttgagtTCAGCTCCTGcatcaagtttttttaaatgtacagtttacGCGTTCCTATTCTGCTCAGTTATATAGGTTGA

Function

symbol description
evx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic skeletal joint development; fin morphogenesis; and ventral spinal cord interneuron specification. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; fin; gut; neural tube; and pronephros. Orthologous to human EVX1 (even-skipped homeobox 1).

NR:

description
PREDICTED: homeobox even-skipped homolog protein 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0033334 fin morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09320 EVX; homeobox even-skipped homolog protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU196966 False 208 lncRNA 0.57 1 15737151 15737358
TU196967 False 208 lncRNA 0.35 1 15737617 15737824
XM_043218293.1 True 2194 mRNA 0.51 3 15736947 15740329

Neighbor

gene id symbol gene type direction distance location
tax1bp1a tax1bp1a,LOC107654769,LOC107592002,LOC107710350,LOC107748654,LOC107688347 coding downstream 34792 15685154 ~ 15702155 (-)
creb5a creb5a,LOC107748653,LOC107592000,LOC107710349,LOC107602393,LOC107654766,LOC107688348 coding downstream 67981 15661683 ~ 15668966 (-)
wipf3 sb:cb649,wipf3,LOC107592062,LOC107602389,LOC107688351,LOC107592063,LOC107654765 coding downstream 94490 15636663 ~ 15642457 (-)
LOC122323318 NA coding downstream 132856 15598655 ~ 15604091 (-)
LOC122323317 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107563697,LOC107656642 coding downstream 140664 15588991 ~ 15596283 (-)
snx10a LOC107592007,LOC107748666,LOC107656653,LOC107710327,LOC107688406,LOC107602366 coding upstream 94575 15834904 ~ 15839908 (-)
cbx3a cbx3a,LOC107656668,LOC107592008,LOC107688340,LOC107602402 coding upstream 103354 15843683 ~ 15847374 (-)
nfe2l3 nfe2l3,LOC107748669,LOC107656667,LOC107710360,LOC107592065,LOC107602401 coding upstream 108269 15848598 ~ 15854316 (-)
pals2b mpp6b,LOC107748671,LOC107592011,LOC107656663 coding upstream 162462 15902791 ~ 15919610 (-)
fam221a fam221a,LOC107748673,LOC107592014,LOC107656661,LOC107739639,LOC107688403 coding upstream 191555 15931884 ~ 15936477 (-)
G133376 NA non-coding downstream 54874 15681758 ~ 15682073 (-)
G133375 NA non-coding downstream 55321 15681085 ~ 15681626 (-)
G133370 LOC107710351,LOC107688346 non-coding downstream 63944 15672182 ~ 15673003 (-)
G133361 NA non-coding downstream 110667 15625325 ~ 15626280 (-)
G133315 NA non-coding downstream 255745 15480332 ~ 15481202 (-)
G133387 NA non-coding upstream 13101 15753430 ~ 15754646 (-)
G133392 NA non-coding upstream 19019 15759348 ~ 15759640 (-)
G133444 NA non-coding upstream 30366 15770695 ~ 15771078 (-)
G133450 NA non-coding upstream 38761 15779090 ~ 15779634 (-)
LOC122323539 NA non-coding upstream 56969 15797298 ~ 15799128 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other downstream 76227 15659919 ~ 15660720 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other downstream 88368 15644862 ~ 15648579 (-)
G133217 NA other downstream 367211 15366434 ~ 15369736 (-)
zgc:114119 LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983 other downstream 845029 14887528 ~ 14891918 (-)
G133132 NA other downstream 952524 14784188 ~ 14784423 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other upstream 181894 15922223 ~ 15924285 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other upstream 540628 16280957 ~ 16508595 (-)
G133834 pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710 other upstream 1116650 16856979 ~ 16869564 (-)
LOC122323321 NA other upstream 1142658 16882987 ~ 16883480 (-)
G133842 NA other upstream 1146131 16886460 ~ 16887000 (-)

Expression


Co-expression Network