G133772 (sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697)


Basic Information

Item Value
gene id G133772
gene name sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16557441 ~ 16558450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU197563
TTACTGAAACACTGCATGTTGAAAGGGTTCTCTTTCTTGACTGTAGAGTTGATAGGTTGGATTCCGGTTTGATTAACAGTCAGCTCGTTGACAGTATTTGCTGCAGGACAATCTGTTGTTTCAGATTTTACTATAGATGTTGCCTCTGGGACTTTAAAGGAGAGGTTCAGAGAGACTAAGTGCTCATGTTGGCCCTCAGGTTGACTGTTAGGATAGGGTGAAATGTGAATAGAACTAGAAGAATGTGGCATTAAACTAGTTTTCATGCTGTGGTTCTCCATCTCACCAGTGGTGGTAGAACCCAGAGCATGAAGATCGTTATCCATAGGTCCACACCTGACCATCATTTTTCCATTTGATTGGCTGAGACTTACGGATGAGTCGTCCCTTACGCTTTGGGTTTCTGATACACTGGTTGGAAGAGATGAAATAGGTGGTGGACTGTCTGAAAATGAGCTCAGGGTGTTTTCATTGTTCTCCACAACATCCCCTTCTTCTTCAAATGAAATATCATCAAGACAGTCATCATCATAAGTGCTCATGCTGTCAAAACTCTCCATATCTGTATCTTTCTCATAGATGGCTTCTGCCAGAGGAGTGTTTGGAATCTGCCCACCCATGTGCATGCGTATGTGCTGCTGTAACACAACTGCATTTGTGAACTTTTTCTGACAGATCGGGCATGAATGCTGAATCCGAAGAGGAGGCTTTGCACGGTGAACACCAAAGTGTGTCTTTAAGTTACCCTTTGTGGTGAATGCCCGTCCGCAAACCTTGCATTTAAATGGCCTCTCCCCTGTATGGATGCGGTAGTGCATCTTCAGCGCGCTCTGACAGCTTAGTACGCGGTGACAGATAACACACTGATTGGGCTCCATCATCTTTTTGTCAATGTTTTCCACAAGCTGTTGGAGCTTTGATGTCTCAGATGTTTGCATAGACTCTTGGAGACCACCAAATGGGAACTTGGCCTTGAACTGATCCAAAATGAGTGGAGGAGAAGATGATTT

Function

symbol description
sall3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in blastoderm and shield. Orthologous to human SALL3 (spalt like transcription factor 3).
sall3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within limb morphogenesis; negative regulation of smoothened signaling pathway; and olfactory bulb interneuron development. Predicted to be active in nucleus.

NR:

description
PREDICTED: sal-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197563 True 1010 lncRNA 0.44 1 16557441 16558450

Neighbor

gene id symbol gene type direction distance location
znf516 znf516,LOC107696949,LOC107592028,LOC107688320,LOC107563696 coding downstream 64715 16456613 ~ 16492726 (-)
ngly1 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding downstream 438262 16114281 ~ 16119179 (-)
satb1a satb1a,LOC107739638,LOC107593608,LOC107688330,LOC107748681,LOC107656649,LOC107592069 coding downstream 515477 16035473 ~ 16041964 (-)
tbc1d5 tbc1d5,LOC107748680,LOC107656654,LOC107688331,LOC107739565 coding downstream 523929 16011844 ~ 16033512 (-)
dazl LOC107656655,LOC107592019,LOC107593610,LOC107739568,LOC107688400,LOC107748682 coding downstream 546128 16006305 ~ 16011313 (-)
si:ch73-196l6.5 si:ch73-196l6.5,LOC107748759,LOC107697203,LOC107592102,LOC107563699,LOC107656579 coding upstream 92279 16650729 ~ 16654802 (-)
slc52a2 slc52a2,LOC107656640,LOC107739551,LOC107748697,LOC107592033,LOC107697026,LOC107563698,LOC107748696,LOC107697021,LOC107656639 coding upstream 96762 16655212 ~ 16663534 (-)
eppk1 eppk1,LOC107656638,LOC107748699,LOC107697067,LOC107739550,LOC107592034 coding upstream 109512 16667962 ~ 16681330 (-)
pleca LOC107748698,LOC107697034 coding upstream 127675 16686125 ~ 16772130 (-)
eif3eb eif3eb,LOC107748702,LOC107592037,LOC107656637,LOC101483159,LOC108249253 coding upstream 216175 16774625 ~ 16783225 (-)
G133771 NA non-coding downstream 6356 16550387 ~ 16551085 (-)
LOC122323515 NA non-coding downstream 8615 16545998 ~ 16548826 (-)
LOC122323712 NA non-coding downstream 224540 16321710 ~ 16332901 (-)
G133587 NA non-coding downstream 430733 16124310 ~ 16126708 (-)
G133564 NA non-coding downstream 455459 16005112 ~ 16101982 (-)
G133774 sall3,sall3b,LOC107592031,LOC107696994,LOC107563697,LOC107656642,LOC107739555 non-coding upstream 967 16559417 ~ 16559831 (-)
G133775 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding upstream 1656 16560106 ~ 16561976 (-)
G133783 NA non-coding upstream 13151 16571601 ~ 16602536 (-)
G133812 NA non-coding upstream 141239 16699689 ~ 16699907 (-)
LOC122323643 NA non-coding upstream 295788 16854238 ~ 16867352 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other downstream 48846 16280957 ~ 16508595 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other downstream 633156 15922223 ~ 15924285 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other downstream 817112 15736947 ~ 15740329 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other downstream 896721 15659919 ~ 15660720 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other downstream 908862 15644862 ~ 15648579 (-)
G133834 pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710 other upstream 298529 16856979 ~ 16869564 (-)
LOC122323321 NA other upstream 324537 16882987 ~ 16883480 (-)
G133842 NA other upstream 328010 16886460 ~ 16887000 (-)
LOC122324114 NA other upstream 331379 16889829 ~ 16890874 (-)
LOC122324112 NA other upstream 333242 16891692 ~ 16892581 (-)

Expression


Co-expression Network