G133774 (sall3,sall3b,LOC107592031,LOC107696994,LOC107563697,LOC107656642,LOC107739555)


Basic Information

Item Value
gene id G133774
gene name sall3,sall3b,LOC107592031,LOC107696994,LOC107563697,LOC107656642,LOC107739555
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16559417 ~ 16559831 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU197565
CTTGAGATTACCCTTGGTTGTGAATGCTCGACCGCAGACAGAGCAGCCGAAGGGTTTTTCGCCAGTGTGTGTGCGCTCGTGGATCTGCAAGGCACTAGCAGAAGAGAAGTTCTTCCCACATGCACTGCAGTTGTGTTGTTTAGGGGTCCGTCTGGGAGGGGGTGGTCCAGTGAGTGAGGTGACGGCCGGAATCATCACCTCGGAGCGCGAGGTGGGAGACTGCAGGCCAAATGCAGGGAAAGGCCCCTCTTTTAGCATGTATGGTCTATTGCAAGCATTTATCTCCAGTTTCACTGCAGTCGGCGAATTTTTAGTATCCTGTTCAGTAGACCTTTgagcattttctgaaaataaataacatttaaaaaaagcataaaatcagcAGTGtacttaaacacacaaataccaCAAAGCT

Function

symbol description
sall3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in blastoderm and shield. Orthologous to human SALL3 (spalt like transcription factor 3).
sall3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within limb morphogenesis; negative regulation of smoothened signaling pathway; and olfactory bulb interneuron development. Predicted to be active in nucleus.

NR:

description
PREDICTED: sal-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197565 True 415 lncRNA 0.48 1 16559417 16559831

Neighbor

gene id symbol gene type direction distance location
znf516 znf516,LOC107696949,LOC107592028,LOC107688320,LOC107563696 coding downstream 66691 16456613 ~ 16492726 (-)
ngly1 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding downstream 440238 16114281 ~ 16119179 (-)
satb1a satb1a,LOC107739638,LOC107593608,LOC107688330,LOC107748681,LOC107656649,LOC107592069 coding downstream 517453 16035473 ~ 16041964 (-)
tbc1d5 tbc1d5,LOC107748680,LOC107656654,LOC107688331,LOC107739565 coding downstream 525905 16011844 ~ 16033512 (-)
dazl LOC107656655,LOC107592019,LOC107593610,LOC107739568,LOC107688400,LOC107748682 coding downstream 548104 16006305 ~ 16011313 (-)
si:ch73-196l6.5 si:ch73-196l6.5,LOC107748759,LOC107697203,LOC107592102,LOC107563699,LOC107656579 coding upstream 90898 16650729 ~ 16654802 (-)
slc52a2 slc52a2,LOC107656640,LOC107739551,LOC107748697,LOC107592033,LOC107697026,LOC107563698,LOC107748696,LOC107697021,LOC107656639 coding upstream 95381 16655212 ~ 16663534 (-)
eppk1 eppk1,LOC107656638,LOC107748699,LOC107697067,LOC107739550,LOC107592034 coding upstream 108131 16667962 ~ 16681330 (-)
pleca LOC107748698,LOC107697034 coding upstream 126294 16686125 ~ 16772130 (-)
eif3eb eif3eb,LOC107748702,LOC107592037,LOC107656637,LOC101483159,LOC108249253 coding upstream 214794 16774625 ~ 16783225 (-)
G133772 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding downstream 967 16557441 ~ 16558450 (-)
G133771 NA non-coding downstream 8332 16550387 ~ 16551085 (-)
LOC122323515 NA non-coding downstream 10591 16545998 ~ 16548826 (-)
LOC122323712 NA non-coding downstream 226516 16321710 ~ 16332901 (-)
G133587 NA non-coding downstream 432709 16124310 ~ 16126708 (-)
G133775 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding upstream 275 16560106 ~ 16561976 (-)
G133783 NA non-coding upstream 11770 16571601 ~ 16602536 (-)
G133812 NA non-coding upstream 139858 16699689 ~ 16699907 (-)
LOC122323643 NA non-coding upstream 294407 16854238 ~ 16867352 (-)
LOC122323645 NA non-coding upstream 308026 16867857 ~ 16882412 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other downstream 50822 16280957 ~ 16508595 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other downstream 635132 15922223 ~ 15924285 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other downstream 819088 15736947 ~ 15740329 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other downstream 898697 15659919 ~ 15660720 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other downstream 910838 15644862 ~ 15648579 (-)
G133834 pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710 other upstream 297148 16856979 ~ 16869564 (-)
LOC122323321 NA other upstream 323156 16882987 ~ 16883480 (-)
G133842 NA other upstream 326629 16886460 ~ 16887000 (-)
LOC122324114 NA other upstream 329998 16889829 ~ 16890874 (-)
LOC122324112 NA other upstream 331861 16891692 ~ 16892581 (-)

Expression


Co-expression Network