G133834 (pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710)


Basic Information

Item Value
gene id G133834
gene name pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16856979 ~ 16869564 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU197668
CTCGTCCACAAAACTCGTTATGGTGTTCGCTGCTTTCGACGAGCGGAAAAAACTCGCGTTCAGTCCCAGTTTCTCGGCCGCGGAAAAGGTCTTGTAGATGGAGATCATGTAGTCGTGAGGTTCAATCGTGTCCTTGATCGCCCGCTGTGACTGGACGTCTCCTGATAACGATGATGCCGACGGTGCGCTTTTGCCGTGTCTGACCCTTCTGTGGCCATCAGCGGGAACAGACTTGGACACTTTCATGCCTTTGGATGCGCTTGGAAACAGAGGATTTATGGGGTGAAcacaaagaaaatgcaaaagtaaCGTAAAAGTCAAAAGTACCCCCGAGACTCCGCGAGAACGCATCTTGCAGatgcacaagaaaaaaagaaggaccTGCTTGGGGAAAAACACGAACAcatcacatgtgtgtgtgtgtgtgtgtgagtgtgtgcgtgtgtgtgtgaaggagcgCAGAATGAGAGCAGCTCCTCTGAAGAACTGCCTCCTTAAGTACCGTCATGACATTATTAGCTCAACTCAATGCAAACAGCTAAAACTCAAAGACCTCAGCCTCCTgctcagctttcagatgatgctaCCGTCCTCCACGTCggagtcatttttaatatgctcGATTAACAGCAGAACGTAGATCAgtgttgtatgttttattgcTTTGGTTTAGAACCAAGGTAAAGTATAGCGTTTTAAATACGGATGGAACTGCTGCGTACAATacgaaaaaaaaactacaaaataaaagctgcgGAATTTTGCacgtgttttgtgtttattacgTTCGTTACGAATGTGAATGTTTCCCTCCCAAAGTTCGGCAGGTGTAAGTGTGAAGATTGAGCTCTGTGGACTTTATCTCCCTCTAGCGggttgtttctttctttcaacgCATCCTTCCaatgttttaatgtgtatataaaatgtctatatgtagaaataaaatgtcattataaatcagagaaattatgtgtttaaaaaataaaggaatatttgtttttttaagggcAGAATCGCCCtgttatgcatgtatgtgtataagctttgaatattattgttgacatttaaaatcactatgaaatcaaaactgagaattcttgtttttatgtaacattGCCGTGTTTATTATACCTCATATAATGTGCATATCATTTTTCTTAATTCACATGCTCTCATAATCTGATACAATCAATTCTcaccctgttttttttcttattcagaTGCAGTTTTACTTGGATGCACAGTATCTTAGAGTAGGTAAAAAAAGACTATTACACCtttcatttcatgctgacttcaCACTGTTActttatatagaaaaaaacattatgcaagAACTTGAAATTTAGCTTAAGCATATAGATATAATGTTGATAGGaacagatttaaatatttaatttagttaagtTGTTCATGttctacatttattataaatcaatGTGCTCAATTTATAGTTGTGGCTTACAGATCATGATCACACGAAAAACAATAGCAGTTTATAGACaaagacatatatttttatagatatatttataggAGAATACTTTGTGTTGTGATTTATTTAGGGTCTCATGAGCAGAAGCAGTAGACCACACAACAACATGAGCAGATACACAGACTGCGACGAGACAGCTGGACTGGAGTCAAAGATGCTGCCACCGCCGCCGTTATCCTCCGTGACGACGATCACAGAAGACGGCGTTGTAGCAGctctgagagagaaagatctGGACTCAGATCTCCAATCATTCAGAGTAAAGGCCAACTTCAAGTTCTCGCCTGAAAGAGGCAGAAGGagaaaaatgactgtaaacacTTACTTATATAATAACAGCTGACAGcgaaccccccaaaaaactgaatttgtgCAACAAAGTCAACCCACCACTTGTAAAGATGGCCAAATCTGTGTAATTGGCCCAGCAGCCACTGAATGGGATGGTGGTGTTTCCTTGAAGGCCTTCTATGGGATTTCCGTTAGCGTCTTTGAGCACAGCTGACATGGTCAGAGTCGTCACGCCCACAGACACGCAGTCACCCTGAAAACAGACACGCAAACATGCTCTTCTGGTTCGATAGCAGGTGCAGTTTTCTAGTAATTGCCTGGAAACTGGTTTCGGGTGTTCTTAAAGAAGTCTCACCGCTGTGTCCACAGCCATAATGCTGGGTTGCACACTCAGGGGCCCAGGGGACAGTCCCGCCACAGGCTGGACCACCACCTTCAGGGACGAGACCGTCTTCACCACCGCCACCTGCTGGTCTTCACGGGTCACTTCCTGAGTGGCCACcttaaagagagagacacagttAAAATAAGGGAAAAGCCACATGAAGTttataaaaagGATGGGTCGCTggaagaaggaggaggagggatGATGCCCAGGGACGACACATTGAAGCCGATGGACTGACTCAGATTGCCAGAGACAGCAGCGCGGCCCAGATCATCAGCAATGTTCTTCAGGACTTCAAACTGTTGGTCTTGTACTGCAGACGGAATAAAGCCAGATTGTTGACCAGATTATCCCCGAAGAACTCCTCCTCGGTCATGGCTGGGAGATTGAAGGCCAGGAACAGAACCGGAGAGGTGCGGATTTGGACCGGCTCTGAGCCACGAAGAAGTATGTTCATCATTTTGTAGTTTTGGTCAAAAAAGTTGGAGCCGTGAGTGGAGTTGAAATCAGGGACGTATTGACCTGATGAGTGTTAAGAggatgtaaaatatgaattataatcTGTGCAAAAATGTTGACAAAATGTTGGTCCTCTATCCTGCAGGGGGTGGTGTTTAACACCAGTTTTCATGCTGTGCTTTACCTGTGTCCAGCATTTAGCAGCATAAGTCTCAGCTTCTGTGGTGTTGTGCTGGTGAAATAGATGTCAAAGGATTTATTGGTGGCAACGATGGAGTGGAATAGAGATACACGTTTCTGACACGTGTAGCCGGCACACCAGCCGTGGTCTTGTGGACCTGTGACGAGATATTTACACGAAGCTGCCTCTGAATCCGTACCTTCTCCAACGGTGTAATGGATCACGTTGTCTTCGATACTCAGCTCATCTGTCCCAAAAACACCAATAGCAGGAGCAAAGCCATTGTGAAAAGCACATCCCTTGATTTATAAAACACCAGAGAGTATCGTGGGTCGGAGATGTCGTTCCATCCCTCCTGCCCGGTGTGGTAGAACTGGACGTTTCTGATCTGGGCTTTTCCTGTGACGCAAATATCATCagcattaatgatttttttaatccttATGCTGTGCTAGAAAGGGCTGGTTAGCCAATGATGATATGTGCAAATATTatactttcatatttaaaacagtttttttttttttttttttttttaattctttctcttatttttttccattagtGGAGTGGTTTTTTTGTAGGATATGTCCTGCTTGTACGTCAAGACTGAGGCCCAGCGGTTTATACCTCTGAAATCAATTCCTCCGCTAAAGATAAAGGCTGGTCCAGAGTCAGCGTGCGGCCATAATCTGTGACCACAGTGATAGTGCGGATTTCTGTCTGCCAAGGGTCATAGCTGGTGGtggacagcaggatctgatccCCAACCTGGAGTCCACAGATTCCTGTAGTGAGATAGTGCTGTTTCCTGCTTGGGACGTGCTAGCAAGCTTGGTGTGATACACATTGTGTGGCATGCCATACAGATCAAGAGATCCAAACACACCTAAAAGACAAGGTTTCTACTGAAATCAACACTTTTCTAAGTTGGCAGTCAATTAATATGAACATCTCTAATGCAAATATGCTCAATAAAGATATCTTTACAAGATACTTTGACTTCATTTACCCAGCACTTTGGAGCCTTGGTTTAATCCAGATGGCAGTAGCCAGTCTGGTGTGGAATGGCTTCCTCTCAGTATGATCTGTAGTTGACCTCTGAAGGGTTCATCAGGCCAGCCAGCAATCAGACGTCCACCCTGATTGAGCGAAACGTGTACAGAGAGAGTTGAACAgaattaacaaaattattacACATGAGGAGTCTGGTTCTAGATGGCGTAATGAGCCTAAAATATCTATACCATGTATGTCTATGAATGTAgtttttgatgtatttactTGAATGGAGATATATGTGGCATTCAGAACAACGTTGTTGTATTGAGAAACGCTGCGGGTGGAGGTGCCATTGTTTATGTCCGGAATCTCCAGAACTCCAACTATTTTCAGCTTGTTCAGGGAGGGGACCACAACATCCACAACCATCCAAATGCCTTTTAGACAGAAAGAGgttttgataaaataatttaattttttcctttttatcttTGCATGAACTTTGTGACCTTTAAAGGTGCTTACCAGCTGGAATGATCACATCAGAGCCTTCTTGTGGCACATTGAAGTTGTTCACTGAGCTTGACCTCCAAAATGATGTATTTGACCAGAGGCTGACTCAAGCAGgatatattttattagcaaagaaaacagatgaaatatataataataaaatgctgaaaGTGTGTGGTAACATACACATAGTTTGCAGGCCTGCGGCTGGTTGTGTTGGATGTATTGGCTGGCGTGACTACAGGACCAGGGAGTGGTTGGATACAGTTGGGATAGTAACATTGATATACTCTGAAGTCCAGCGATCTGTCTACAACTGAGCGGTCCACACTGTTCCTCTTCCTCCGGCTAACAATTCGGTCTCTTCCAGACACTGTAGACACAAAATTCGAAATCTTACTACTACTGAAATAAATAGACTAAGATAGAATAGAAAGACAGCATGgctaaaaaagcaaaaaaaaatttacccATGTAATAGACGTCTTTGGATGTTTTGTTAAAGTACCAATCCCCGTTTACATTCGCAGTGGGGTTCAGAGGTTGGGAGGAGCCATTCCTGTCATCTATGATGCGGAACCGGTCAGGTGTCTGGGTCAGGTTGTGGTCGATAATTACATAATGTTCTGGCTGCATTTAAGAAAGAGTCAGATTAACATGTTGTGTATTGCACAAATTCTACATTTAGCATTTAAGCCTTCTGGAGTAATGCAATAAGTCAGGGGTTTGTTCATGTCAACTGACAATATCTACATCATTTTAAGAATCTAATatcttaacaatataaaatgctaattttatcGCAAATCATGCTTTATTGGAACAATAGTTATTTTGAAGATGTATACTGGATTATTGTGTAGTGTGCATACTTTACCCGAAAGCCGTAGACCATTCCATTGTATGAAATGTTGGTTATCTGGGATGCACCATCAAAGTACCAGTTGTATGTTTGGCCTGTGGGCACCATTGCCATCCAGCCAAATGTGTGGGTCACCAGTTTTTTGAGAAAAGGAAGCACACATGTCCCTAAAGAGAGATATGATACTGAGATTAAGTGAACTAAGAAGGTTTTTCTAAACATCACAGCTCACttcaacataaaaaacaatattccctcaaatgaaattttttgttattttttagcTTTAGATCAATTTTTGAGTTtcatacacatttaaattagCTCAATTGTCCAGAGTTTATTATTTCATCATACCATATGAGTTGGTTAGAATGACATCTTTAGACACAAGTGAAGGCGGTGAGGGATTGACGACGACCATGCGGTGGAAGTTAATGGTGTTATCACATACTCCAGCAGGAACGCCAACACTCCACTCTGTTCTTGGGAAGCAGCGTCTTGGGTCGAGCAAGTTAGTCCACGCTACCACCTTGTAACTAACATTGCCTTTTCagaaacacaatatatataaataaatattcagtctttttttaattactaatactttttttgaaGCTGTTTGCAccatgccaataaagaacccaTTAAAATCTTTCACAAATTATGTATCTAAATACTGTAATGTCTGATGTTTCTCTACCTGTTAATGACCCATCAGTATCTACTAGTGCCACCTCATGCTCCCATCTGAACCAGGCCTTGTTGGGTGACTGATAGTACTGGATCCCACTGAATCTCGCGCTCCAGCCTCCACAGCGGAAAATGCAGGTTCCAACAATTTCTGCCACCCCGACTGCAGCACACGACGGACGGTCAAAGTTCACAAACTTGGTGTTGATGACGCTCATACCATCATCCAGAGGCAGGACAACACCACGAGCGGTGCAGTAGCTGCTCCCCAGTCCCAGCTCATCCACATGGCCCACCATGGTGCTGTTGACCACAGCAGCCCCTCCATCCAATCCCCATCCGCTGACGTACTGCTGGATGATCCTCTTGGACTCCACTCCTGCCTTCTCGTTATTGACCATCAGGAACTCGCTGAACTGAACCGCTCCTACATTCACCCACTCTGCACCTTTCTCGTTGTTCCAGGAAGTAAACCGGCGGAAGACTGCTGGTGCCGGTGTTGTGGAGCTGCAGCTGCCAGTACGCACGGGGAAAAACTCTTGGAAGATCCACAAACCGAACCAGCCCTGAGAATGCACCGTATTGTTGAAGAACTGTCCCAGTGGTACTCTCTTCTGACAGATGTTGGGGTTATATGAAGGGCCATCAGGATTATCATGCATACGATACCAGAAGCCGAAGTGCGTTCCACCAGCTGCGGCATTGTGCCTAATGGTGTTATTAGGGTTGGTGACCCAGTATGCAGCTGGAGTGACGTCGTCATTTAGTAAACTGGTGCTCTGTTTTACAAATACCGCCAGGTTGTACTGAAGGATGTTGCCAGTCTCAATGCCGTCCTCGATAAAGAAGGCCCCACCCATGATATTGTAGATGACATTACGCTCCACCAGAAGGTTGTGGGTGTTATGAATGGTGACAGCACGATTGTAGGACTGGTGGATGCCACATCCCCGCACATATGACTTAAACTTAACATCACCCATCAGATGCCAGTGGATTGGGTAGCGTCCCAGACGGAAAGCCTGTCCAACA

Function

symbol description
pkhd1l1 Predicted to act upstream of or within sensory perception of sound. Predicted to be located in cytosol.

NR:

description
PREDICTED: fibrocystin-L-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197668 True 6922 TUCP 0.43 8 16856979 16869564

Neighbor

gene id symbol gene type direction distance location
nudcd1 nudcd1,LOC107697115,LOC107563704,LOC107739547,LOC107748703 coding downstream 25232 16814826 ~ 16831747 (-)
LOC122323461 LOC107592103,LOC107697214,LOC107656599,LOC107748761,LOC107563715,LOC107739630,LOC100537369 coding downstream 60459 16793249 ~ 16796520 (-)
eif3eb eif3eb,LOC107748702,LOC107592037,LOC107656637,LOC101483159,LOC108249253 coding downstream 73754 16774625 ~ 16783225 (-)
pleca LOC107748698,LOC107697034 coding downstream 84849 16686125 ~ 16772130 (-)
eppk1 eppk1,LOC107656638,LOC107748699,LOC107697067,LOC107739550,LOC107592034 coding downstream 175649 16667962 ~ 16681330 (-)
grb10a grb10a,LOC107667783,LOC107739542,LOC107565574,LOC108440880,LOC107656633,LOC108273075,LOC105905327 coding upstream 32206 16901770 ~ 16944523 (-)
si:ch73-109i22.2 LOC107748764,LOC107667791,LOC107739537,LOC107656629,LOC107599558,LOC107579479,LOC107565563 coding upstream 89587 16959151 ~ 16966115 (-)
msmp2 si:ch1073-70f20.1,LOC107748766,LOC107565577,LOC107693399,LOC107656628,LOC107599557 coding upstream 172411 17041975 ~ 17042989 (-)
si:ch73-347e22.8 NA coding upstream 178975 17048539 ~ 17051619 (-)
si:ch73-347e22.4 LOC107693273,LOC107748715,LOC107565585,LOC107739595 coding upstream 202767 17072331 ~ 17083543 (-)
G133812 NA non-coding downstream 157072 16699689 ~ 16699907 (-)
G133783 NA non-coding downstream 254443 16571601 ~ 16602536 (-)
G133775 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding downstream 295003 16560106 ~ 16561976 (-)
G133774 sall3,sall3b,LOC107592031,LOC107696994,LOC107563697,LOC107656642,LOC107739555 non-coding downstream 297148 16559417 ~ 16559831 (-)
G133772 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding downstream 298529 16557441 ~ 16558450 (-)
G133856 si:dkey-240h12.4,LOC107599596,LOC108440884,LOC107565569,LOC107748765,LOC107739598,LOC107656625,LOC107667793 non-coding upstream 103942 16973506 ~ 16978942 (-)
G133865 NA non-coding upstream 104467 16974031 ~ 17041793 (-)
G133852 NA non-coding upstream 147973 17017537 ~ 17020967 (-)
G133879 NA non-coding upstream 153682 17023246 ~ 17024514 (-)
G133886 NA non-coding upstream 186537 17056101 ~ 17056311 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other downstream 348384 16280957 ~ 16508595 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other downstream 932694 15922223 ~ 15924285 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other downstream 1116650 15736947 ~ 15740329 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other downstream 1196259 15659919 ~ 15660720 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other downstream 1208400 15644862 ~ 15648579 (-)
LOC122323321 NA other upstream 13423 16882987 ~ 16883480 (-)
G133842 NA other upstream 16896 16886460 ~ 16887000 (-)
LOC122324114 NA other upstream 20265 16889829 ~ 16890874 (-)
LOC122324112 NA other upstream 22128 16891692 ~ 16892581 (-)
LOC122324113 NA other upstream 26544 16896108 ~ 16897143 (-)

Expression


Co-expression Network