LOC122323277


Basic Information

Item Value
gene id LOC122323277
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17164694 ~ 17168108 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU197774
TTTTCCACCGATTGTGCTGGATGATGAGGTTTTTCAGTAATTGGgcactttatgaaaacagactttgttttcttctttataGTGATATTCAAATTGAAACTGTGCATAATGCATAGCAGTGACTGACTGTAAAAGATGTATTTAAGGTACGTCATATTTTAGACTAGAGAAAGTTTTGAGTTATTTCTGCTTATTTCAAGAGATGAAGTAAAATTTGATTTCTCATGCTCTTTGAATCTATTTAGAATAAAAGTCTGGTCAcattatttaactaaaaaaacaaaaaaaacatccactCTCAGTAGTGTAGAGATATATAAAGAACTGCACAGATATCAATCATTTTCAATCCTAACACTTTCAACTTAAAGAAAAGTGAAGTCTGTGTGGGAGACTTTTATGGTAAGGTGACAAGACGTGCCACTTCCCATGACATCTAAGTACCAAAAGAGCTATAGAGAGCAGAGCACTGAGATGTCATACAACAGTCTACCTGTGGCAAAACATGGTTATTTCTGTCAGGACTTTATATATGGGTGCTGTGAAAGGATCCACATCTACATATctctatccacctttttcttcaaTGCAGAAGTAAGCCTATGGGTAGTTTTGTAAgactaaaaatagctggatgcGGAAGCTAAACCACAGAACCCAAAGAATTTACAAATGGGTGCACACATTTTTATgtcaagactttttttttagaaaatgttcagATTTTAGCCAATCCGAAAATCCTTGGCAGAGCATGTTTCCGCGAAGTGGCACATCTGGTCACCTATTTTTATGCCCTCATGTGGATTTTTCCCATAAAATTTTGCTGAGCAATGGAAAATGTGACGTCGCTTTAAGTATGAGGTACGAAACAGTGTGTCGGCTCAAGCAAGGTCCAGCTTGTGTCTGCCACTGGAATTGGTGAGAGGCACCACAGCTGAGGGCAGACCCTCAGTCTGGACCCCCAGAGTCAGGCGCTGCCGGGTCTGGCTGCTGCGCTGCTCCAGCGACAGGGCGTCGTGCTTACGAGACAAATCCTCTATCATCTGAGC
>XR_006246988.1
GCGCTGCCGGGTCTGGCTGCTGCGCTGCTCCAGCGACAGGGCGTCGTGCTTACGAGACAAATCCTCTATCATCTGAGCTTCGTGCTGTTTCAGAGACTGCAGAGAGTGCCTGCCAATCAAAGGTGTTCTCAGTGCCAGAATGGTGGCTTCCAGCTGCTTGGCTTCATCCACCAAACCAAACTGAACCTGGGAGTAACAGGTCAGTGGTCAGCTGTTGCCGTGCTTCCTGTAAGCGACTAAAAAGATACGCTGAGATTAGCGACCACATAGTCTTCATATCAACAGACAAAAGTCAAGCTGTTCAAAAGACTGATCGATGCACTGCTGAAGGATGCGTTGTGCTCCATCAATCACCTCTACCTCCTTCTTCAGTTCAGCTTCTACAGGGTCACTGATCAGCTCCTTGCCTCGACGACCTTCCCTGATGTTCAAGCACTC

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197774 True 1052 lncRNA 0.40 2 17167025 17168108
XR_006246988.1 False 438 lncRNA 0.52 4 17164694 17167102

Neighbor

gene id symbol gene type direction distance location
ago3b ago3b,LOC107599544,LOC107656616,LOC107693387,LOC108272767 coding downstream 5426 17141827 ~ 17159268 (-)
lipea LOC107599546,LOC107739528,LOC107748718,LOC107693390,LOC107565586,LOC107656618 coding downstream 39499 17104940 ~ 17125195 (-)
LOC122324173 LOC107693391,LOC107565587,LOC107599547,LOC107656619,LOC107739594,LOC108444404,LOC103037120,LOC105028270,LOC106588242 coding downstream 60183 17095534 ~ 17104511 (-)
tomm40l tomm40,tomm40l,LOC107748716,LOC107739529,LOC107656621,LOC107599548 coding downstream 70189 17090619 ~ 17094505 (-)
apoa4a apoa4a,LOC107693394,LOC107599550,LOC107748768,LOC107739627 coding downstream 75944 17087423 ~ 17088750 (-)
si:dkey-211g8.8 NA coding upstream 10761 17178869 ~ 17184117 (-)
si:dkey-211g8.4 NA coding upstream 15429 17183537 ~ 17185721 (-)
usf2 usf2,LOC107739527,LOC107724110,LOC107656615,LOC107693382 coding upstream 19069 17187177 ~ 17196451 (-)
LOC122324047 LOC107739586,LOC107656565 coding upstream 36769 17204877 ~ 17206280 (-)
LOC122323323 LOC107656565,LOC107739585,LOC107656564,LOC107739586,LOC107589464,LOC107599573,LOC107589461 coding upstream 43354 17211462 ~ 17212804 (-)
G133902 NA non-coding downstream 579 17163832 ~ 17164115 (-)
G133861 slc9a3.2,LOC107656591,LOC107739626,LOC107693290,LOC107748744,LOC107599577,LOC107565571 non-coding downstream 32699 17127666 ~ 17131995 (-)
G133887 NA non-coding downstream 107827 17056425 ~ 17056867 (-)
G133886 NA non-coding downstream 108383 17056101 ~ 17056311 (-)
G133879 NA non-coding downstream 140180 17023246 ~ 17024514 (-)
G133919 sbk2,LOC107724114,LOC107693243,LOC107739621,LOC107656585,LOC107599589 non-coding upstream 80576 17248684 ~ 17251304 (-)
G133920 NA non-coding upstream 92602 17260710 ~ 17261499 (-)
G133917 LOC107693378,LOC107724100,LOC107589374 non-coding upstream 97556 17265664 ~ 17268048 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding upstream 119559 17287667 ~ 17289380 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding upstream 157223 17325331 ~ 17345216 (-)
trnap-ugg_15 NA other downstream 263918 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 266093 16897995 ~ 16898601 (-)
LOC122324113 NA other downstream 267551 16896108 ~ 16897143 (-)
LOC122324112 NA other downstream 272113 16891692 ~ 16892581 (-)
LOC122324114 NA other downstream 273820 16889829 ~ 16890874 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other upstream 45853 17213961 ~ 17218790 (-)
G133949 NA other upstream 115224 17283332 ~ 17284744 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other upstream 162589 17330697 ~ 17334234 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 445338 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 761581 17929689 ~ 17935436 (-)

Expression


Co-expression Network