G133948 (LOC107693373,LOC107724108,LOC107739520,LOC107599537)


Basic Information

Item Value
gene id G133948
gene name LOC107693373,LOC107724108,LOC107739520,LOC107599537
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17330697 ~ 17334234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU197840
GTTTTATCTAATGCAAACAATCAAAATACTTTGCACACAGAATATTGAGATGTAAACAtcccaaaaacataaaaccaacaaacacatttaatcaTTCATGAGAGTACACAAGTACACATAAATATCCAGGAAACGTCGTTCTTAAATGGTgaggattttatttaaaaataataataattaaagtttttgctgtaaatattttatgcatggcATTTTGGCATTTTCCCCCAGAAAATTTACAACAAGGTTTATGcagctcatgaaaaaaaatgtaaatcttaaaaaaaaaaaaaaaaaaaaaaaactaaatacttttatggttattttgttttccataaCTTTGGTGAATGCAGcaatggaaaatatttttttattattagaattttttttattttattttattatttattttgcattcaaaGAGACactcacttaaaaataaaataatattttgggtTTTCTGAAATGCACATTCTCTGACTTTTTACACAAAGCAAAAGTCAGATAAAATGCGAGATAAAGCATTCCAAAATAGACACTGAaatacacacaagcacacaaatacagacacacaaactGGACACATACACACCTTGACATCAGAAGTCAGCAATATGACATCATCAACACTGGCTTTGACATCTTCATGCGTTTTGTCTTTTCACTATGATTGCATCTGCTTTTTTTGTCAAGTTACAAAGGTAAGAATCCACtagaaactcaaatataaacagaaaacaggaataaaaacaatttctaaagtcacagagaaaaataaaacaaaacaatgtttataatcaagaatatgaataataatgattactatatatatatgcacataaattggcatgtgtacatatttgaacattcgggatttaataatttttttttttttaaccttttctttttcaacGCGTTTAAATTGAGTTAAAGTTaataaaagcttaaacattGCAGAGTGATCTAAAATACTATATTATGGCCCAATAATCTTGCTCAGCCAGGTCGTTCTCAGACATTCCACCACAACATTGTCCATTTGATGTGGAGacagctgaaaaacacagaaattgctaacaaaaaagacatttttcttgAATATAGTATAGATAAACAAGACACCTTTTAATTCTAAATCCTAACTCATCGGTTAGATAATAATGCATCCTAGAGTGACACAGAGTGTTTGAAGTAGCTTTGCagattttgttctatttttctgttttgtacaCTCTTATGTTCTGCACAGCCGTGTCACAGGAAAAGATAAAAAGCCGTCAGAACACGGAAGCACAGACACAAATGAAGAAGTTTCAGAATAGCCCTTGGATTAAATTGTCCACTGTATGGCCAACCCTTTCCTTTTCCCCCTCAATACAACAGTTTGAGTAGTTAATTAAGTGTGAAGAGTATGCTGTCTTATTTGACATTACTGCATGCCCATGATTAAATCTCAGCTCTTAAACGCTTATAAATAATAGAACAACCGTAATGACTCCAGGGCGTCATACAAAGCTGTTCTCTGATTGGTCAAACATGCAAGAAAGAGGCATGACTTCTATCAGATCTCAATGGCTGAATTCAGTTTCCAAACGCCTGCCTGCTCAGGCATTTTTAGTTCAGACTCGATTTCCCCATCAATCTGACAGCCTTTTGATCATATTATAAAACAGCCAAAATTGTAtccacaatgcaaaaaaatcaaaccaaCAAGTATTCATGTCAGCTTTGATTCACAGTCTCAGTATAAGAGGCTAAAAATCTGATCATCAGTATAACACCCGTCTCCCAATGAAGATGTTTTCCTCCATTATACTCCATATGAATAAGCTCTAATATGGCTGATGGCATTTGGACTATATTAACAGTGCAGACTAAAGAGTCAGGTCACAAAACGAGTGACATTTTTCAAGTCCTCAAGTTCTTCTCTTTGACGAATTACCAGCGTTTTCTTCACCTGATGGCAAACTGTTTAGCGTGCACAATAATCCATTCCCAAGTCGAGTCCAATGTGATTTGAGACAGGTCAAATCATAGCTTCTATGAGGTAATTCAGTGTACTATTGGACACTGGTCCGTTTCATCCAGTTTATCTCATTGTTCccttatttatgatttaatgacAATTGTGATACACCTCTTCGAGAATAACGCTTTGCATTGAACTAAACCAAACATTTGGAGGCAAGGTCAACTGCATCATTGGATTcaggaataaaacaaattaaccCCTAAACCAATTAGCTTTTACATGGAATGTACTAAATGGAGAAAACTTGGCCTATTCTAATAATGAACCTTTTCCTTTTTGCATCTCCTCGGATCATGTCTAAATAGTGCCATCGAGACACTATATGCTAATCACAGGTCAGAGGAGACCTGGGCCCTTCACATTTCTATTTATGGAGAATTTAGGGATCTACAGATTCACTTATGCTGTGGTTTTTAAATCCATCCTTCTCTCAATAGCAATGCACTGTGTATTCCGTTCATTTGGGACTAATTTTGGACCCCTTTCTCGTTTCCTTCCTGCTTTCCGTTCTTCAGCCTTCTTTACACTCCACCATCTTCCCTCCCTTCGGCTTGTGCAATCACACCTCATCTATCCATCGTCTCCTTACCATCTTTCTTTTTGCGCTCACACGGTTACTTCGTTCTTGCTCCCCGTCCTCAGCGCCTGACCTCCACCCCCTGCGCCCCCTCCCCCACCTCCTCCGGGAAGGAAATGGAGCTGTTCGATGGTGTTCTGGCGTTTCGTGGCGAAGGCCATCCGGCGAGCACTGTGCGCCATCACTCCGGGTCCTCCTCCGGAGCCATGGACCTCCCCCCATCCCATAGTCCCAGCCCCGTGGCCGGAGGACATGGTGGCCACCGTGTGGTCTTTCTCGCGGCCGGAGGTAGGGTGCGAATTCATTTTGATCATGTGATGGCGGTCGAGCGAGGGCGTCACGCACACGTTCTGCTGGGATTGCGTTTTCTGGTGGTGCGTGAGACGGGACATGTTGGGCGCCATCCCGCCGTAATCACCCATCATTCGCTCCTCCAGGCGGTCCGGAGAGACCAGGAGGCGTTCATGAGACTTACGTAAAGTCTGAGTGTTGGAGCTCTTGCTGGTGGTCATGGGTTTGTAGTACTGATGCTGCTGGTTCTTGGAGAGGCGTGAGAGAGTGTTCCCCTCCCCCAGCGCCAGAAGCTGGTCTTGGGACATCACCCGGCGAGGCGGTTTACTCATCGTGTCAAACGTGGGGTTGTACTGCGTCTGGGGTAGAGGGTAAGGGTTGGGGGTGGAAGTGGGCACGTGGATGCGCGTGCGGGACGTGTTTAGCGGGAGGGTACCCCGGGCCCCCAGTGTGAAGTCTCCACCCCAGGGAAGGTGGTGCTGGGAGGAGTGAAAACTGGGGGGAGCGTTATCTGGCCTTCGCTTGGAGGTGTAATATCCAGAATATTCATCCAAATTTTTCTCTGTAGTAAGGAAATAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107693373 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197840 True 3479 TUCP 0.41 3 17330697 17334234

Neighbor

gene id symbol gene type direction distance location
rcvrn3 rcvrn3,LOC107724101,LOC107589377,LOC107656611,LOC107599570 coding downstream 49829 17274717 ~ 17280868 (-)
necap1 necap1,LOC107599542,LOC107656614,LOC107739526,LOC107589372,LOC107724115,LOC107693381 coding downstream 71564 17255045 ~ 17259133 (-)
LOC122323367 si:ch211-171h4.6,LOC107724079,LOC107656587,LOC107739584,LOC107693286,LOC107599572 coding downstream 103204 17223716 ~ 17227493 (-)
LOC122323323 LOC107656565,LOC107739585,LOC107656564,LOC107739586,LOC107589464,LOC107599573,LOC107589461 coding downstream 117893 17211462 ~ 17212804 (-)
LOC122324047 LOC107739586,LOC107656565 coding downstream 124417 17204877 ~ 17206280 (-)
cacng6a cacng6a,LOC107693285,LOC107589389,LOC107724075,LOC107739513,LOC107599526,LOC107656581 coding upstream 150712 17484946 ~ 17492735 (-)
styk1a si:dkey-14o18.6,LOC107693362,LOC107739618,LOC107599525,LOC107724061,LOC107589393 coding upstream 192178 17526412 ~ 17534108 (-)
fam131ba fam131ba,LOC107665489,LOC107724098,LOC107693361 coding upstream 220318 17554552 ~ 17577989 (-)
si:ch211-288g17.3 LOC107589397,LOC107693356,LOC107724088,LOC107599520,LOC107665487,LOC107739507 coding upstream 273719 17607953 ~ 17612267 (-)
si:ch211-288g17.4 LOC107693284,LOC107724121,LOC107589401 coding upstream 315648 17649882 ~ 17656526 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding downstream 41317 17287667 ~ 17289380 (-)
G133917 LOC107693378,LOC107724100,LOC107589374 non-coding downstream 62649 17265664 ~ 17268048 (-)
G133920 NA non-coding downstream 69198 17260710 ~ 17261499 (-)
G133919 sbk2,LOC107724114,LOC107693243,LOC107739621,LOC107656585,LOC107599589 non-coding downstream 79393 17248684 ~ 17251304 (-)
LOC122323277 NA non-coding downstream 162589 17164694 ~ 17168108 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding upstream 255762 17589996 ~ 17594324 (-)
G134247 NA non-coding upstream 263830 17598064 ~ 17670694 (-)
G134252 NA non-coding upstream 285940 17620174 ~ 17645633 (-)
G134272 NA non-coding upstream 454793 17789027 ~ 17789326 (-)
G134273 mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503 non-coding upstream 455317 17789551 ~ 17798825 (-)
G133949 NA other downstream 45953 17283332 ~ 17284744 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 111907 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 429921 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 432096 16897995 ~ 16898601 (-)
LOC122324113 NA other downstream 433554 16896108 ~ 16897143 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 279212 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 595455 17929689 ~ 17935436 (-)
G134318 NA other upstream 676648 18010882 ~ 18011399 (-)
si:dkey-266f7.5 NA other upstream 835289 18169523 ~ 18188029 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other upstream 891375 18225609 ~ 18241613 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_03795430_03804685 SHISA7B, SHISA7 misc CI01000321 null 3792915 ~ 3805511 (+)
rainbow trout (Oncorhynchus mykiss) G2321632 NA non-coding NC_050572.1 CM025859.1 34789371 ~ 34792949 (+)
mexican tetra (Astyanax mexicanus) G309942 NA non-coding NW_019172854.1 APWO02000060.1 848144 ~ 850962 (-)