G134273 (mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503)


Basic Information

Item Value
gene id G134273
gene name mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17789551 ~ 17798825 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU198298
TTCTTATAATGATTTTAcagctttttattaataacatacaACAGTTAGTCaacatgttaaatatgcattatcATAGCATCGAGATTCCACAACACAGTCCTGCAATGACTTTCTATAATGATGCACGTAAAATGTTCCTGTGAATCTTCATCTTCTGAGGCAGATCTCAGTGCGTGACTCGAGTTGGTCTTAACATCCTAGCCATGGATCTTGTCTTTGTGTTCTTGATAGGAAAGATATCTTTCTGGCCATCTCTGTATTGTAGATTCTCTTACAGTTCTCATagttctttctctctcgtttACGGCAGGGTTTCTCATAGTATCTTCTGCGCTTCACAGACTCAATTATTCCATCCTTGGACAGCACTCTgcagaggaaaaagagagagaaagagcaagagaaaagaa
>TU198299
TTCTTATAATGATTTTAcagctttttattaataacatacaACAGTTAGTCaacatgttaaatatgcattatcATAGCATCGAGATTCCACAACACAGTCCTGCAATGACTTTCTATAATGATGCACGTAAAATGTTCCTGTGAATCTTCATCTTCTGAGGCAGATCTCAGTGCGTGACTCGAGTTGGTCTTAACATCCTAGCCATGGATCTTGTCTTTGTGTTCTTGATAGGAAAGATATCTTTCTGGCCATCTCTGTATTGTAGATTCTCTTACAGTTCTCATagttctttctctctcgtttACGGCAGGGTTTCTCATAGTATCTTCTGCGCTTCACAGACTCAATTATTCCATCCTTGGACAGCACTCTgcTGCTCAGGACGCCATATGCCGCATCGACATTGCCGTTCTGGACCATGACAGTCCGAGCAACGAAACGAAGATGGCTCGCCATGTTTCGCCCGTGTTCCCCTCAACTGTGCACGGCTGGAAACGCGCTCTACTCCAAAGACGGTTCCTGGAAGTAAGCGCGCGAACTTTAG

Function

symbol description
mrps21 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human MRPS21 (mitochondrial ribosomal protein S21).

NR:

description
PREDICTED: 28S ribosomal protein S21, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198298 False 410 lncRNA 0.38 2 17789551 17798825
TU198299 True 544 lncRNA 0.44 2 17797065 17798825

Neighbor

gene id symbol gene type direction distance location
scamp3 scamp3,LOC107724082,LOC107693344,LOC107656474,LOC107599508,LOC107739575 coding downstream 1452 17780819 ~ 17788099 (-)
rnf115b si:ch211-81a5.1,LOC107656472,LOC107724083,LOC107599565 coding downstream 10395 17772595 ~ 17779156 (-)
ash1l ash1l,LOC107693346,LOC107739498,LOC107656475,LOC107724081,LOC107599509,LOC107589474 coding downstream 19764 17741746 ~ 17769787 (-)
lrrc71 lrrc71,LOC107739500,LOC107656478,LOC107724080,LOC107693350,LOC107577895 coding downstream 48536 17736186 ~ 17741015 (-)
setdb1a setdb1,LOC107724106,LOC107589406,LOC107693347,LOC107739578 coding downstream 54141 17721000 ~ 17735410 (-)
snx27a snx27a,LOC107750804,LOC107599501,LOC107678803,LOC103472691 coding upstream 117675 17916500 ~ 17929196 (-)
efna1a efna1a,LOC107678802,LOC107693333,LOC107739488,LOC107750807,LOC107589415,LOC103043830,LOC108437910 coding upstream 170659 17969484 ~ 17982455 (-)
efna3a efna3,efna3a,LOC107750808,LOC107739487,LOC107693331,LOC108272373,LOC108437928 coding upstream 232484 18031309 ~ 18101591 (-)
LOC122323324 NA coding upstream 392168 18190993 ~ 18220415 (-)
LOC122323394 NA coding upstream 410900 18209725 ~ 18216545 (-)
G134272 NA non-coding downstream 225 17789027 ~ 17789326 (-)
G134247 NA non-coding downstream 118857 17598064 ~ 17670694 (-)
G134252 NA non-coding downstream 143918 17620174 ~ 17645633 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding downstream 195227 17589996 ~ 17594324 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding downstream 444335 17325331 ~ 17345216 (-)
G134299 celf3a,LOC107693341,LOC107739496,LOC107589410,LOC107750801 non-coding upstream 53347 17852172 ~ 17857186 (-)
G134298 NA non-coding upstream 70306 17869131 ~ 17871956 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding upstream 140122 17938947 ~ 17947834 (-)
G134317 NA non-coding upstream 166750 17965575 ~ 17966539 (-)
G134319 NA non-coding upstream 219144 18017969 ~ 18018262 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 173274 17613446 ~ 17616277 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other downstream 455317 17330697 ~ 17334234 (-)
G133949 NA other downstream 504807 17283332 ~ 17284744 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 570761 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 888775 16900705 ~ 16900776 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 130864 17929689 ~ 17935436 (-)
G134318 NA other upstream 212057 18010882 ~ 18011399 (-)
si:dkey-266f7.5 NA other upstream 370698 18169523 ~ 18188029 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other upstream 426784 18225609 ~ 18241613 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 888524 18687349 ~ 18691249 (-)

Expression


Co-expression Network