cks1b (cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526)


Basic Information

Item Value
gene id cks1b
gene name cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18225609 ~ 18241613 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU198393
GATGAGAGGGAAGTTCAGGGAAACGTAAGCGGTGGCTGATTTAGTAAATTGCGTTGGAAAAAAGTTTTCACATTCAAACACAAGTAGCGTTTAATGAAGTAATCGCCATAATCGTTACCTTTACAAGAAAGAAGAAGTAGTAAAACATCACGCTATGTCTCACAAGCAGATTTATTACTCCGATAAATATGACGACGACAAATTTGAGTACAGgCATGTAATGCTTCCTAAGGACATCGCTAAAAGAGTTCCTAAGACCCATCTGATGTCGGAGACCGAATGGAGGAATCTGGGTGTTCAGCAGAGTCAAGGATGGGTGCATTACATGATCCATCAGcctgAACCACACATCTTACTCTTCCGACGTCCTCTACCTCAATCCCAGTGACTCCAGAATCACAAAGGAATTCTGAAAACTAGATGCAATCTGAAGATGTCTGAGAGATGCCGGGCGCACTCCGGATCAGATGGTGTCAATATCATTCGTGCTGCTTTAGACTTTCAGTCTGTTAACTATTATGTGAGTTAGATTATCTTCACCGTGCTTGTTCTCCGCCCTAcctgagagagggagagaattATGCTCAATTTCCCCGCTGTGCCTGTATTTATTATTCCTTATCAGTCTTGCGTTATAACGATTCTTTATATGAGCTTCACTTGATGCATTGGTGAATTGACTCTGTAAGGTCTAGCAGCATTAGAAATTGTTGTACATAGTATACAtactgctttattaaaaata
>TU198394
GATGAGAGGGAAGTTCAGGGAAACGTAAGCGGTGGCTGATTTAGTAAATTGCGTTGGAAAAAAGTTTTCACATTCAAACACAAGTAGCGTTTAATGAAGTAATCGCCATAATCGTTACCTTTACAAGAAAGAAGAAGTAGTAAAACATCACGCTATGTCTCACAAGCAGATTTATTACTCCGATAAATATGACGACGACAAATTTGAGTACAGgCATGTAATGCTTCCTAAGGACATCGCTAAAAGAGTTCCTAAGACCCATCTGATGTCGGAGACCGAATGGAGGAATCTGGGTGTTCAGCAGAGTCAAGGATGGGTGCATTACATGATCCATCAGcctgAACCACACATCTTACTCTTCCGACGTCCTCTACCTCAATCCCAGTGACTCCAGAATCACAAAGGAATTCTGAAAACTAGATGCAATCTGAAGATGTCTGAGAGATGCCGGGCGCACTCCGGATCAGATGGTGTCAATATCATTCGTGCTGCTTTAGACTTTCAGTCTGTTAACTATTATGTGAGTTAGATTATCTTCACCGTGCTTGTTCTCCGCCCTAcctgagagagggagagaattATGCTCAATTTCCCCGCTGTGCCTGTATTTATTATTCCTTATCAGTCTTGCGTTATAACGATTCTTTATATGAGCTTCACTTGATGCATTGGTGAATTGACTCTGTAAGGTCTAGCAGCATTAGAAATTGTTGTACATAGTATACAtactgctttattaaaaataaaaaataaaactctagCTGTGACTTTCACTTCACTGAAATCCGAAGCGTGGTAAAGTTAGTTCCCTTTCAGAAGAGATGCTGCATACAGTATAAGCTGGTTATATGACGTACTTGGGCCTGTTTAGGAGTAAGCAAGCAGATAACCTCAACTTTTGGTTCCAAAATGGAGGTAACTTTCAGGGTATGCAACTTGCTTTC
>XM_043217538.1
ATGTAGTCATTTCAATTTTATGTgcaattttgaataaaacatgaataaccaataatgtaataatgtttttagaccataattataattttagttaattgGTGAGACTTCTATAGATATGATAAGAACATTGAGAACATGGGCACATTAAGAAAGCAATATTGGCCCTTAGGGTCAAACATTTATGGTACTCATCATATATCAACCAGTAGTGTCGCTTAATTACCTGGAAAACTAGTTTATTAGGGAAAGAAACACTGAGAAAACATGGCCTGAGGGCAAACTCGCCATTAAATGAGAGAGATAAATTTATGCATGTGCTTatgaatgttatttaaaaaacggTATTGTGACTTTGTATCTCACaatttacatgttttatatgtGATATAAagtcgttattattattttacttttttttttattcagtggcggaaacgggcTCGCAAACGCTGATTTCACGCAGCCGCCATGTTGAAATCGAAAGCGAGGCTCCGGTGGTAGGAAAACCCGGAAGTAGCGTGTCTGCTGCTGCTTATATTTTACAGCGGTTGGTGTCCAACGAGCTGTCCCGGCGATCAGCATCTGGATGGGGTCTAACAGTGGATATGCCATCAACCCGGCTCAAGACTTCGGCCCGACATTACATTGCAGGATGGGGACACGAAGTGTTCAGGTAAAACATCACGCTATGTCTCACAAGCAGATTTATTACTCCGATAAATATGACGACGACAAATTTGAGTACAGgCATGTAATGCTTCCTAAGGACATCGCTAAAAGAGTTCCTAAGACCCATCTGATGTCGGAGACCGAATGGAGGAATCTGGGTGTTCAGCAGAGTCAAGGATGGGTGCATTACATGATCCATCAGcctgAACCACACATCTTACTCTTCCGACGTCCTCTACCTCAATCCCAGTGACTCCAGAATCACAAAGGAATTCTGAAAACTAGATGCAATCTGAAGATGTCTGAGAGATGCCGGGCGCACTCCGGATCAGATGGTGTCAATATCATTCGTGCTGCTTTAGACTTTCAGTCTGTTAACTATTATGTGAGTTAGATTATCTTCACCGTGCTTGTTCTCCGCCCTAcctgagagagggagagaattATGCTCAATTTCCCCGCTGTGCCTGTATTTATTATTCCTTATCAGTCTTGCGTTATAACGATTCTTTATATGAGCTTCACTTGATGCATTGGTGAATTGACTCTGTAAGGTCTAGCAGCATTAGAAATTGTTGTACATAGTATACAtactgctttattaaaaataaaaaataaaactcta
>XM_043217540.1
ATGTAGTCATTTCAATTTTATGTgcaattttgaataaaacatgaataaccaataatgtaataatgtttttagaccataattataattttagttaattgGTGAGACTTCTATAGATATGATAAGAACATTGAGAACATGGGCACATTAAGAAAGCAATATTGGCCCTTAGGGTCAAACATTTATGGTACTCATCATATATCAACCAGTAGTGTCGCTTAATTACCTGGAAAACTAGTTTATTAGGGAAAGAAACACTGAGAAAACATGGCCTGAGGGCAAACTCGCCATTAAATGAGAGAGATAAATTTATGCATGTGCTTatgaatgttatttaaaaaacggTATTGTGACTTTGTATCTCACaatttacatgttttatatgtGATATAAagtcgttattattattttacttttttttttattcagtggcggaaacgggcTCGCAAACGCTGATTTCACGCAGCCGCCATGTTGAAATCGAAAGCGAGGCTCCGGTGGTAGGAAAACCCGGAAGTAGCGTGTCTGCTGCTGCTTATATTTTACAGCGCTGTCCCGGCGATCAGCATCTGGATGGGGTCTAACAGTGGATATGCCATCAACCCGGCTCAAGACTTCGGCCCGACATTACATTGCAGGATGGGGACACGAAGTGTTCAGGTAAAACATCACGCTATGTCTCACAAGCAGATTTATTACTCCGATAAATATGACGACGACAAATTTGAGTACAGgCATGTAATGCTTCCTAAGGACATCGCTAAAAGAGTTCCTAAGACCCATCTGATGTCGGAGACCGAATGGAGGAATCTGGGTGTTCAGCAGAGTCAAGGATGGGTGCATTACATGATCCATCAGcctgAACCACACATCTTACTCTTCCGACGTCCTCTACCTCAATCCCAGTGACTCCAGAATCACAAAGGAATTCTGAAAACTAGATGCAATCTGAAGATGTCTGAGAGATGCCGGGCGCACTCCGGATCAGATGGTGTCAATATCATTCGTGCTGCTTTAGACTTTCAGTCTGTTAACTATTATGTGAGTTAGATTATCTTCACCGTGCTTGTTCTCCGCCCTAcctgagagagggagagaattATGCTCAATTTCCCCGCTGTGCCTGTATTTATTATTCCTTATCAGTCTTGCGTTATAACGATTCTTTATATGAGCTTCACTTGATGCATTGGTGAATTGACTCTGTAAGGTCTAGCAGCATTAGAAATTGTTGTACATAGTATACAtactgctttattaaaaataaaaaataaaactcta
>XM_043217541.1
tttagGTTCTCTCAGGGAAGCAGAAGGTGATGAAGAGGCAGCTGCTGGACTGCATGATCTTTTGGTAACTGCAGATGTTGGCATGGAGGACTTGGGCATCTCTGGCTCGGGGCTCTCTGGTAAAACATCACGCTATGTCTCACAAGCAGATTTATTACTCCGATAAATATGACGACGACAAATTTGAGTACAGgCATGTAATGCTTCCTAAGGACATCGCTAAAAGAGTTCCTAAGACCCATCTGATGTCGGAGACCGAATGGAGGAATCTGGGTGTTCAGCAGAGTCAAGGATGGGTGCATTACATGATCCATCAGcctgAACCACACATCTTACTCTTCCGACGTCCTCTACCTCAATCCCAGTGACTCCAGAATCACAAAGGAATTCTGAAAACTAGATGCAATCTGAAGATGTCTGAGAGATGCCGGGCGCACTCCGGATCAGATGGTGTCAATATCATTCGTGCTGCTTTAGACTTTCAGTCTGTTAACTATTATGTGAGTTAGATTATCTTCACCGTGCTTGTTCTCCGCCCTAcctgagagagggagagaattATGCTCAATTTCCCCGCTGTGCCTGTATTTATTATTCCTTATCAGTCTTGCGTTATAACGATTCTTTATATGAGCTTCACTTGATGCATTGGTGAATTGACTCTGTAAGGTCTAGCAGCATTAGAAATTGTTGTACATAGTATACAtactgctttattaaaaataaaaaataaaactcta
>XM_043217542.1
CGCTTCAAACTCGATGAGAGGGAAGTTCAGGGAAACGTAAAACATCACGCTATGTCTCACAAGCAGATTTATTACTCCGATAAATATGACGACGACAAATTTGAGTACAGgCATGTAATGCTTCCTAAGGACATCGCTAAAAGAGTTCCTAAGACCCATCTGATGTCGGAGACCGAATGGAGGAATCTGGGTGTTCAGCAGAGTCAAGGATGGGTGCATTACATGATCCATCAGcctgAACCACACATCTTACTCTTCCGACGTCCTCTACCTCAATCCCAGTGACTCCAGAATCACAAAGGAATTCTGAAAACTAGATGCAATCTGAAGATGTCTGAGAGATGCCGGGCGCACTCCGGATCAGATGGTGTCAATATCATTCGTGCTGCTTTAGACTTTCAGTCTGTTAACTATTATGTGAGTTAGATTATCTTCACCGTGCTTGTTCTCCGCCCTAcctgagagagggagagaattATGCTCAATTTCCCCGCTGTGCCTGTATTTATTATTCCTTATCAGTCTTGCGTTATAACGATTCTTTATATGAGCTTCACTTGATGCATTGGTGAATTGACTCTGTAAGGTCTAGCAGCATTAGAAATTGTTGTACATAGTATACAtactgctttattaaaaataaaaaataaaactcta
>XM_043217543.1
GAAAGAAGAGCAGATACTGCAAATAAGACAGAgctaatatatttgtaaattgtTTTCACTGTgtaacataaatgaataatacctgccttgtttttcttttgtttatttattgttttaaggatgctttgttttcagaaaaatggcggaaacgggcTCGCAAACGCTGATTTCACGCAGCCGCCATGTTGAAATCGAAAGCGAGGCTCCGGTGGTAGGAAAACCCGGAAGTAGCGTGTCTGCTGCTGCTTATATTTTACAGCGGTTGGTGTCCAACGAGCTGTCCCGGCGATCAGCATCTGGATGGGGTCTAACAGTGGATATGCCATCAACCCGGCTCAAGACTTCGGCCCGACATTACATTGCAGGATGGGGACACGAAGTGTTCAGGTTCTCTCAGGGAAGCAGAAGGTGATGAAGAGGCAGCTGCTGGACTGCATGATCTTTTGGTAACTGCAGATGTTGGCATGGAGGACTTGGGCATCTCTGGCTCGGGGCTCTCTGGTGAGTCTCGTTCTTCTATCAC
>XM_043217544.1
CGCTTATGCGCTTCAAACTCGATGAGAGGGAAGTTCAGGGAAACGTAAGCGGTGGCTGATTTAGTAAATTGCGTTGGAAAAAAGTTTTCACATTCAAACACAAGTAGCGTTTAATGAAGTAATCGCCATAATCGTTACCTTTACAAGAAAGAAGAAGTAGTAAAACATCACGCTATGTCTCACAAGCAGATTTATTACTCCGATAAATATGACGACGACAAATTTGAGTACAGgCATGTAATGCTTCCTAAGGACATCGCTAAAAGAGTTCCTAAGACCCATCTGATGTCGGAGACCGAATGGAGGAATCTGGGTGTTCAGCAGAGTCAAGGATGGGTGCATTACATGATCCATCAGcctgAACCACACATCTTACTCTTCCGACGTCCTCTACCTCAATCCCAGTGACTCCAGAATCACAAAGGAATTCTGAAAACTAGATGCAATCTGAAGATGTCTGAGAGATGCCGGGCGCACTCCGGATCAGATGGTGTCAATATCATTCGTGCTGCTTTAGACTTTCAGTCTGTTAACTATTATGTGAGTTAGATTATCTTCACCGTGCTTGTTCTCCGCCCTAcctgagagagggagagaattATGCTCAATTTCCCCGCTGTGCCTGTATTTATTATTCCTTATCAGTCTTGCGTTATAACGATTCTTTATATGAGCTTCACTTGATGCATTGGTGAATTGACTCTGTAAGGTCTAGCAGCATTAGAAATTGTTGTACATAGTATACAtactgctttattaaaaataaaaaataaaactcta

Function

symbol description
cks1b Predicted to enable several functions, including cyclin-dependent protein serine/threonine kinase activator activity; histone binding activity; and ubiquitin binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within cell division. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Orthologous to human CKS1B (CDC28 protein kinase regulatory subunit 1B).

NR:

description
PREDICTED: cyclin-dependent kinases regulatory subunit 1

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K02219 CKS1; cyclin-dependent kinase regulatory subunit CKS1

RNA

RNA id representative length rna type GC content exon number start site end site
TU198393 False 745 lncRNA 0.41 4 18225808 18227143
TU198394 False 944 lncRNA 0.41 4 18225609 18227143
XM_043217538.1 True 1294 mRNA 0.40 5 18225793 18240853
XM_043217540.1 False 1278 mRNA 0.40 5 18225793 18240853
XM_043217541.1 False 740 mRNA 0.43 4 18225793 18231229
XM_043217542.1 False 657 mRNA 0.42 4 18225793 18227155
XM_043217543.1 False 523 mRNA 0.47 4 18231089 18241613
XM_043217544.1 False 780 mRNA 0.41 4 18225793 18227163

Neighbor

gene id symbol gene type direction distance location
LOC122323324 NA coding downstream 5194 18190993 ~ 18220415 (-)
LOC122323394 NA coding downstream 9064 18209725 ~ 18216545 (-)
efna3a efna3,efna3a,LOC107750808,LOC107739487,LOC107693331,LOC108272373,LOC108437928 coding downstream 124018 18031309 ~ 18101591 (-)
efna1a efna1a,LOC107678802,LOC107693333,LOC107739488,LOC107750807,LOC107589415,LOC103043830,LOC108437910 coding downstream 243154 17969484 ~ 17982455 (-)
snx27a snx27a,LOC107750804,LOC107599501,LOC107678803,LOC103472691 coding downstream 296413 17916500 ~ 17929196 (-)
ubap2l ubap2l,LOC107589420,LOC107669979,LOC107599491 coding upstream 3876 18245489 ~ 18267248 (-)
tuft1b LOC107693318,LOC107729883,LOC107589508,LOC107732690 coding upstream 27558 18269171 ~ 18281116 (-)
cgnb LOC107729898,LOC107693317,LOC107589422,LOC107670001,LOC107716597 coding upstream 62125 18303738 ~ 18321719 (-)
pygo2 LOC107716595,LOC107589423,LOC107729895,LOC107670005,LOC107693316 coding upstream 81198 18322811 ~ 18328270 (-)
s100s s100s,LOC108272970,LOC103039105,LOC108433762,LOC107559723,LOC107716593,LOC107670010 coding upstream 93443 18335056 ~ 18339512 (-)
G134319 NA non-coding downstream 207347 18017969 ~ 18018262 (-)
G134317 NA non-coding downstream 259070 17965575 ~ 17966539 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding downstream 277775 17938947 ~ 17947834 (-)
G134298 NA non-coding downstream 353653 17869131 ~ 17871956 (-)
G134299 celf3a,LOC107693341,LOC107739496,LOC107589410,LOC107750801 non-coding downstream 368423 17852172 ~ 17857186 (-)
G134334 NA non-coding upstream 26692 18268305 ~ 18269060 (-)
G134332 NA non-coding upstream 48444 18290057 ~ 18303657 (-)
G134365 LOC107726654 non-coding upstream 175413 18417026 ~ 18417853 (-)
G134411 oxr1b non-coding upstream 215552 18457165 ~ 18460899 (-)
LOC122324145 NA non-coding upstream 281587 18523200 ~ 18532017 (-)
si:dkey-266f7.5 NA other downstream 37580 18169523 ~ 18188029 (-)
G134318 NA other downstream 214210 18010882 ~ 18011399 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other downstream 290173 17929689 ~ 17935436 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 609332 17613446 ~ 17616277 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other downstream 891375 17330697 ~ 17334234 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 445736 18687349 ~ 18691249 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other upstream 635001 18876614 ~ 18933228 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other upstream 1301169 19542782 ~ 19652807 (-)
LOC122324012 NA other upstream 1429174 19670787 ~ 19688386 (-)
G134895 NA other upstream 2140407 20382020 ~ 20382727 (-)

Expression


Co-expression Network