G134334


Basic Information

Item Value
gene id G134334
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18268305 ~ 18269060 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU198417
cgaattatattttaaataatgtttgtgtactgtgtttttaaatatatttatattgatataatttatattataataacatattattaaacatgaatttgttcttaaatatatgattgtgtgcatttatatattcacaataaatacacacagtacacacacattatttgatcaaacactTTTATGTTCAAACACTTATAAATGCgatgaatcgtttgacagcgctaattaAAATGCATCCTCCTGTATCTGTACGCGTGTATACTCTAATATACATTTCTGAATTCACTGTACCTTGTaaagctgtctttttttttttctttggaaactGCGATTGTATTGTGTTTTGAAGAACGACTGTTTTTCTGTTACTGTATTCTGTGCTCAACCCTACCTTTCCATCCATCTcttattaaatgtgaaaaatttgTTACTGTAGATGGAATTGTAGCACTACGCACATTTCTCTGGTATTGTACTTTCCCTGgtttatgtatttatcttaagggctaattaataaaaagtatttaagatTGCTCACAATATGTGCAAGAGAAAGTAACCTTTTCTTTTATAACCGGc
>TU198419
ttgttcttaaatatatgattgtgtgcatttatatattcacaataaatacacacagtacacacacattatttgatcaaacactTTTATGTTCAAACACTTATAAATGCgatgaatcgtttgacagcgctaattaAAATGCATCCTCCTGTATCTGTACGCGTGTATACTCTAATATACATTTCTGAATTCACTGTACCTTGTaaagctgtctttttttttttctttggaaactGCGATTGTATTGTGTTTTGAAGAACGACTGTTTTTCTGTTACTGTATTCTGTGCTCAACCCTACCTTTCCATCCATCTcttattaaatgtgaaaaatttgTTACTGTAGATGGAATTGTAGCACTACGCACATTTCTCTGGTATTGTACTTTCCCTGgtttatgtatttatcttaagggctaattaataaaaagtatttaagatTGCTCACAATATGTGCAAGAGAAAGTAACCTTTTCTTTTATAACCGGc
>TU198421
atatatatatatatatatatatatatatatatatatatatatttatttatttatttattgtgatcaATCATATccgaattatattttaaataatgtttgtgtactgtgtttttaaatatatttatattgatataatttatattataataacatattattaaacatgaatttgttcttaaatatatgattgtgtgcatttatatattcacaataaatacacacagtacacacacattatttgatcaaacactTTTATGTTCAAACACTTATAAATGCgatgaatcgtttgacagcgctaattaAAATGCATCCTCCTGTATCTGTACGCGTGTATACTCTAATATACATTTCTGAATTCACTGTACCTTGTaaagctgtctttttttttttctttggaaactGCGATTGTATTGTGTTTTGAAGAACGACTGTTTTTCTGTTACTGTATTCTGTGCTCAACCCTACCTTTCCATCCATCTcttattaaatgtgaaaaatttgTTACTGTAGATGGAATTGTAGCACTACGCACATTTCTCTGGTATTGTACTTTCCCTGgtttatgtatttatcttaagggctaattaataaaaagtatttaagatTGCTCACAATATGTGCAAGAGAAAGTAACCTTTTCTTTTATAACCGGcataacagatttatttttttttatataatttgacaattttataattaaagacatttagTGAATTATAATTGTCCCCAGTTTTTCctacaatatatactatatgt

Function

NR:

description
PREDICTED: SLIT-ROBO Rho GTPase-activating protein 3-like isoform X2

GO:

id name namespace
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU198417 False 579 lncRNA 0.29 1 18268408 18268986
TU198419 False 484 lncRNA 0.32 1 18268408 18268891
TU198421 True 756 lncRNA 0.25 1 18268305 18269060

Neighbor

gene id symbol gene type direction distance location
ubap2l ubap2l,LOC107589420,LOC107669979,LOC107599491 coding downstream 1057 18245489 ~ 18267248 (-)
hax1 LOC107729882,LOC107693320,LOC107589419,LOC107599494,LOC107670002,LOC107753511 coding downstream 23470 18241528 ~ 18244835 (-)
LOC122323324 NA coding downstream 47890 18190993 ~ 18220415 (-)
LOC122323394 NA coding downstream 51760 18209725 ~ 18216545 (-)
efna3a efna3,efna3a,LOC107750808,LOC107739487,LOC107693331,LOC108272373,LOC108437928 coding downstream 166714 18031309 ~ 18101591 (-)
tuft1b LOC107693318,LOC107729883,LOC107589508,LOC107732690 coding upstream 111 18269171 ~ 18281116 (-)
cgnb LOC107729898,LOC107693317,LOC107589422,LOC107670001,LOC107716597 coding upstream 34678 18303738 ~ 18321719 (-)
pygo2 LOC107716595,LOC107589423,LOC107729895,LOC107670005,LOC107693316 coding upstream 53751 18322811 ~ 18328270 (-)
s100s s100s,LOC108272970,LOC103039105,LOC108433762,LOC107559723,LOC107716593,LOC107670010 coding upstream 65996 18335056 ~ 18339512 (-)
s100u s100u,LOC107716592,LOC107670009,LOC107578875 coding upstream 72298 18341358 ~ 18349024 (-)
G134319 NA non-coding downstream 250043 18017969 ~ 18018262 (-)
G134317 NA non-coding downstream 301766 17965575 ~ 17966539 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding downstream 320471 17938947 ~ 17947834 (-)
G134298 NA non-coding downstream 396349 17869131 ~ 17871956 (-)
G134299 celf3a,LOC107693341,LOC107739496,LOC107589410,LOC107750801 non-coding downstream 411119 17852172 ~ 17857186 (-)
G134332 NA non-coding upstream 20997 18290057 ~ 18303657 (-)
G134365 LOC107726654 non-coding upstream 147966 18417026 ~ 18417853 (-)
G134411 oxr1b non-coding upstream 188105 18457165 ~ 18460899 (-)
LOC122324145 NA non-coding upstream 254140 18523200 ~ 18532017 (-)
G134426 NA non-coding upstream 264113 18533173 ~ 18533500 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other downstream 26692 18225609 ~ 18241613 (-)
si:dkey-266f7.5 NA other downstream 80276 18169523 ~ 18188029 (-)
G134318 NA other downstream 256906 18010882 ~ 18011399 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other downstream 332869 17929689 ~ 17935436 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 652028 17613446 ~ 17616277 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 418289 18687349 ~ 18691249 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other upstream 607554 18876614 ~ 18933228 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other upstream 1273722 19542782 ~ 19652807 (-)
LOC122324012 NA other upstream 1401727 19670787 ~ 19688386 (-)
G134895 NA other upstream 2112960 20382020 ~ 20382727 (-)

Expression


Co-expression Network