LOC122323254 (sdhaf3,LOC107702681)


Basic Information

Item Value
gene id LOC122323254
gene name sdhaf3,LOC107702681
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5745801 ~ 5752917 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216946.1
GATAACCCTGACAGAGCCGCGGTGAAGAAGTCCGCGCTTACACAAGGACGGCACGGTTAGGTAACGCGTGTAGCGTAGAAACCTTTTATGATATGTCACCTCTCTCGTGAGCTTCGGCTTTGAGCTTTCAGCACGCTTTTCCAGTCAGACTCGGCGTGAAGTTATGGCTCACGTGTCGGCGGTGCGGGCTCTGTATAAGAGGATCCTGCTGCTGCACCGCTTCATGCCCGTGGACCTGCGGGCTCTGGGGGATCAGTACGTGAAGGACGAGTTCAGAAGACACAAGACCGCCACAGACGAAGAGGCGACGCGCTTCTTGACGGAGTGGCAGAACTACAAAGACACTCTACAGACGCAAGTGCTGGAAGCGGTGGGAAACAAGAAATTGGAGTTTGGCTCTGATTTATCGGAAGAGAAACTCAAAGACTTTCAAGATGAACAGATCGGACAGCTTTATGAGCTTATGCTTGAGTCCACAAAACCCAACCGACAGTTTGATATTCAAGAAGAGGGAACGCCAAAGTAACACACCCTCTGAAGGGAAAAAGGACTCTTTATCTCCTCTCTACGGGGAAGTCGTCCCATTGGAACATGTTTCGACTCTCTATGAAGTTCTTTTGTTCATAACTAAGACcgattattaaattaaaacgcTTCAAAAAGTA
>XR_006246984.1
CATCGCCGCCAGAGGGCGGCAGCAGCCCCGATAACCCTGACAGAGCCGCGGTGAAGAAGTCCGCGCTTACACAAGGACGGCACGGTTAGGTAACGCGTGTAGCGTAGAAACCTTTTATGATATGTCACCTCTCTCGTGAGCTTCGGCTTTGAGCTTTCAGCACGCTTTTCCAGTCAGACTCGGCGTGAAGTTATGGCTCACGTGTCGGCGGTGCGGGCTCTGTATAAGAGGATCCTGCTGCTGCACCGCTTCATGCCCGTGGACCTGCGGGCTCTGGGGGATCAGTACGTGAAGGACGAGTTCAGAAGACACAAGACCGCCACAGACGAAGAGGCGACGCGCTTCTTGACGGAGTGGCAGGTAAACAGAGACTCGCCCGCTCCTGTCAGACCGTCCCTTGACCGCAGGCCTCGGCCTCTACACCAGCGACAGAGACACATAAAGAGCTGTGTCCTCCTGAAACACAAGTTTGATCGTAAGCAGTCATGACAGACGTGACGGACAAGTTTCAATTAAGATGTCAGAAAACCCAAGCTCGTGTGATAGAATCTGCGGTACGCTGTAAATATGAACTACAAAGACACTCTACAGACGCAAGTGCTGGAAGCGGTGGGAAACAAGAAATTGGAGTTTGGCTCTGATTTATCGGAAGAGAAACTCAAAGACTTTCAAGATGAACAGATCGGACAGCTTTATGAGCTTATGCTTGAGTCCACAAAACCCAACCGACAGTTTGATATTCAAGAAGAGGGAACGCCAAAGTAACACA

Function

symbol description
sdhaf3 Predicted to be involved in mitochondrial respiratory chain complex II assembly and succinate metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrial intermembrane space. Orthologous to human SDHAF3 (succinate dehydrogenase complex assembly factor 3).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216946.1 False 665 mRNA 0.49 2 5745830 5752917
XR_006246984.1 True 769 transcript 0.52 3 5745801 5752782

Neighbor

gene id symbol gene type direction distance location
col28a1a col28a1,LOC107754784 coding upstream 6616 5725368 ~ 5739185 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding upstream 28120 5716696 ~ 5717681 (+)
LOC122323266 NA coding upstream 131671 5613068 ~ 5614130 (+)
LOC122323836 LOC107598234 coding upstream 174530 5569730 ~ 5571271 (+)
LOC122324215 NA coding upstream 212914 5531960 ~ 5532887 (+)
LOC122323385 sdhaf3,LOC107702681 coding downstream 123133 5876050 ~ 5882974 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 308632 6061549 ~ 6162543 (+)
mylipa mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572 coding downstream 481108 6234025 ~ 6252339 (+)
npr1a npr1a,npr1,LOC107694365,LOC107677481,LOC107754786,LOC107731544,LOC108435512 coding downstream 513466 6266383 ~ 6344260 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding downstream 593872 6346789 ~ 6361192 (+)
G130861 NA non-coding upstream 70957 5674295 ~ 5674844 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding upstream 75269 5659533 ~ 5670532 (+)
G130855 NA non-coding upstream 113373 5614264 ~ 5632428 (+)
LOC122324017 NA non-coding upstream 133463 5610988 ~ 5612338 (+)
G130835 NA non-coding upstream 158286 5565380 ~ 5587515 (+)
G130890 LOC107731557,LOC107702657,LOC107568288 non-coding downstream 35649 5788566 ~ 5924971 (+)
G130899 NA non-coding downstream 45594 5798511 ~ 5934717 (+)
G130893 NA non-coding downstream 170115 5923032 ~ 5953470 (+)
G130891 asns,LOC107754811,LOC107672863,LOC107731557,LOC107702657 non-coding downstream 177935 5930852 ~ 5932842 (+)
G130940 NA non-coding downstream 414709 6167626 ~ 6169359 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 160146 5583505 ~ 5585655 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 431623 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 517575 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 566124 5176270 ~ 5179677 (+)
G130637 NA other upstream 582402 5162586 ~ 5163399 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 32213 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 618918 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 710166 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 767003 6519920 ~ 6526080 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 939057 6691974 ~ 6696204 (+)

Expression


Co-expression Network