krit1 (krit1,LOC107706222,LOC107591966,LOC107654714,LOC107754293,LOC107696538,LOC107592919)


Basic Information

Item Value
gene id krit1
gene name krit1,LOC107706222,LOC107591966,LOC107654714,LOC107754293,LOC107696538,LOC107592919
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14356731 ~ 14363269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216966.1
AGCCGGAAGAGCGCCTTTGTTGTTAGAAATATGACAGAAAAGAGGCATGGTTAAAGAATTAATGACAGCTGGAACTAAAGAGGAGCTACGTGATGGGAAATCAGGACTTAGAGGAAGTGTTCGTAGCTGTTATTCGACCAAAGAACACAGCCAGCCTCAACTCCAAAGAGTATCGAGCTAAAGCATATGAGATTTTACTTATTGAAGTTCCACTAgagggaaaagagaaaaagcgGAAAAAAGTACTGCTTGGGACCAAAATTCAGAGCGACAGTGACCGGACGAAGTCAATTCTGGAGTATGTAGATGAAACCACGAAGCCCATATCCAATAACCAGGGCATAATAGGGAAACGTGTTGTGCACATGAGGAAGTTTCAGTTAGATGGTGACAGCGAAGGGAAGGAAGCCTCCTTATTTATTGTGCCAATCAATGTCAAAGAAAACAGCAAGTCTGTTTATCACCCTGGGAGCCCCAGTTTCTACTGCCTTCAGGACATTATGCGCGTGTGTAGTGAAACCAGTGCCCATTTTTCCTCCACCACCTCAAAGATGTTACTCGCTCTGGACAAGTGGTTAGCAGAGCAGCACACTGTGCCTCATGCCATTCCCGCTCTTTTTCGGCCGGCTCCGGTAGACCGTGTGAAAACTAATGTGAGTAATCCGGCCTATGCAGTGGAAAGCAAGAAAACTGACAGCCTGCTCCACATGGGCTATACGGCTTTGGAGATCAAGAGCAAGATGATGTCCCTAGAGAAAGCTGACTTGTGCATTGAGAACCCGCTCTATGGGACAGATCTGCAGTACACTAACAGAGTGGACAAAGTCATCATCAACCCTTACTTTGGCTTGGGAGCACCAGATTATTCCAAAATTCAGATTCCAAAGAGAGACAAATGGCAGCACAGTATGACCAGCGTCACAGAAGACAAGGAGCGCCAGTGGGTGGATGATTTCCCTCTTCACCGCAGTGCCTGTGAAGGAGACACTGAGCTGCTGTCCAAACTGCTGGAGGGAGGTTTATCAGTTAAACAGCTGGACAGTGACCACTGGGCACCCATTCATTATGCATGCTGGCATGGGAAGGTGGAGGCCACCAAGCTCCTGTTGGAGAAAGGGAACTGTAACCCCAATCTGTTGAACGGCCAACTGAGCTCTCCTTTACACTTCGCAGCCATTGGTGGTCATGCAGAAATCGTCCAGCTCCTTCTTCAGCACCCGGAGATAGACAGAcaCATTGAGGACCAACAGAAAAGATCCCCCCTTCAAGTATGTGAAGAgagcaaacaaaacaactggGAAGAGACGGTGAAACTTCTTCAGCAAGCCAACAATAAACCATACGAGAAGGTGAGAATTTATCGTATGGATGGATCATATAGGACCGTTGAACTGAAACATGGGAACAACACAACAGTGCAGCAGATCATGGAGGGCATGAGACTGTCGCAGGAGACACAACAGTACTTCACCATCTGGATCTGCTCAGAGAACCTCACTCTACAGCTGAAGCCATACCATAAGCCCTTGCAGCACTTAGGGATCTGGAGCGAGATAGTGACTGATCTCACTGCTCTAGATCCCCAAAGAGAAACTCCACAGCTCTTCCTGCGCAGAGATGTCCGGCTACctttagaaatagaaaaaaagGTTGAAGATCCAAAGTCCATCCTCATGCTGTTTGATGAAGCTCGCCACTGCCTCCTCAAAGGCTTCCTATCAGCGTCAGACAGCAAGCTAATTACTCTCGCCAGCCTCCTCCTGCAGATCATTTATGGAAACTACGACAGCAAGAAGCACAAACAGGGCTTTTTGAATGAGGAAAACCTCAAATCCATAGTTCCGATCTCGAAGGTCAAGAGCAAAGCACATCATTGGACTAACAGGATACTTCACGAGTACAAGAGTTTGAGCACCAGTGAGGGTGTGAGTAAAGAGATGCACCACCTCCAGAGACTCTTTCTGCAGAACTGCTGGGATATCCCCACCTATGGGGCGGCTTTCTTCACAGGACAGGTGTTCACCAAGGCCAGCTCCAGTACCCACAAAGTCATTCGAGTGTATGTGGGGGTGAACACCAAAGGCCTGCATCTAATGAACATGGAGACAAAAGTGCTTCATCTCAGTTTGGAGTATGGGACATTTATGTGGCAGCTGGGTCAGGCTGACCAATACGTCCAAATACACAGTCTAGAGAACAAGAAGAACTTTATTGTGCACACCAAACAGGCTGGCCTTATCGTCAAGCTGCTGATGAAGTTGAGTGGACAGATCACACCAAACGACAGAGCTGCATCAGATAAATATGCTTATGGTTAGTTCAGAGAAGCACGTTGTTTTTgccttttgcctttttttttgcagttgttttgatttttaagcTATTATGAAACTACATGACTAAGAGTTGTTTATACCAAAATGTGAGCTATTACATATCCTCATAAATGTTAACCTTATTTACCATACAATATTTTCTTACTGTATATGAcatgcattttataatgtaatgatcagtttttgcttttaacagtttttgtaaatattaatggccattttaataaaaaaaatc

Function

symbol description
krit1 Acts upstream of or within several processes, including circulatory system development; endothelial cell morphogenesis; and negative regulation of endothelial cell differentiation. Predicted to be located in several cellular components, including cell junction; cytoplasm; and cytoskeleton. Predicted to be active in plasma membrane. Is expressed in head; notochord; post-vent region; posterior cardinal vein; and ventricular zone. Used to study cerebral cavernous malformation 1. Human ortholog(s) of this gene implicated in cerebral cavernous malformation and cerebral cavernous malformation 1. Orthologous to human KRIT1 (KRIT1 ankyrin repeat containing).

NR:

description
PREDICTED: krev interaction trapped protein 1

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0007033 vacuole organization biological_process
GO:0045602 negative regulation of endothelial cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0001886 endothelial cell morphogenesis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0005874 microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17705 KRIT1; Krev interaction trapped protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216966.1 True 2571 mRNA 0.45 17 14356731 14363269

Neighbor

gene id symbol gene type direction distance location
eif3hb eif3h,eif3hb coding downstream 14422 14290541 ~ 14342309 (-)
trps1 trps1,LOC107706219,LOC107696539,LOC107754280,LOC107592043,LOC107562946 coding downstream 161990 14097094 ~ 14194741 (-)
csmd3b csmd3,si:ch211-233f16.1,LOC107706218 coding downstream 364412 13659839 ~ 13992319 (-)
rad21b rad21,LOC107696550,LOC107591647,LOC107591962 coding downstream 702247 13646821 ~ 13654484 (-)
mterf3 mterf3,LOC107706158,LOC107654709,LOC107742869,LOC107696564,LOC107591645 coding downstream 709936 13644331 ~ 13646795 (-)
nup153 nup153,LOC107654713,LOC107706220,LOC107754277 coding upstream 401 14363670 ~ 14376436 (-)
ptdss1b ptdss1b,LOC107591967,LOC107706225,LOC107696537 coding upstream 13756 14377025 ~ 14386392 (-)
LOC122324080 NA coding upstream 65634 14428903 ~ 14431551 (-)
ext1b extl1,ext1b,LOC107654722,LOC107754269,LOC107696533,LOC107592940,LOC101464589 coding upstream 132278 14495547 ~ 14561286 (-)
samd12 LOC107706238,LOC107591970,LOC107592942,LOC107654725 coding upstream 215693 14578962 ~ 14641514 (-)
LOC122324095 NA non-coding downstream 84013 14268267 ~ 14272718 (-)
G132852 NA non-coding downstream 795272 13561128 ~ 13561459 (-)
G132846 NA non-coding downstream 806980 13548740 ~ 13549751 (-)
G132837 NA non-coding downstream 828591 13527251 ~ 13528140 (-)
G132828 NA non-coding downstream 870542 13484281 ~ 13486189 (-)
G133016 rbm24a,LOC107696536,LOC107592929,LOC107706227,LOC107754275,LOC107654717,LOC107591968 non-coding upstream 40249 14403518 ~ 14428822 (-)
G133144 NA non-coding upstream 472183 14835452 ~ 14835861 (-)
G133143 NA non-coding upstream 473191 14836460 ~ 14837953 (-)
G133190 LOC107654743,LOC107706254 non-coding upstream 827536 15190805 ~ 15277403 (-)
G133226 NA non-coding upstream 1020578 15383847 ~ 15384115 (-)
G132785 NA other downstream 848278 13507664 ~ 13508453 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other downstream 854361 13494830 ~ 13502370 (-)
G132733 NA other downstream 1071270 13284531 ~ 13285461 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other downstream 1327382 13027817 ~ 13029349 (-)
sem1 NA other downstream 1687516 12597774 ~ 12669215 (-)
G133132 NA other upstream 420919 14784188 ~ 14784423 (-)
zgc:114119 LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983 other upstream 524259 14887528 ~ 14891918 (-)
G133217 NA other upstream 1003165 15366434 ~ 15369736 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other upstream 1281593 15644862 ~ 15648579 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other upstream 1296650 15659919 ~ 15660720 (-)

Expression


Co-expression Network