LOC122323266


Basic Information

Item Value
gene id LOC122323266
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5613068 ~ 5614130 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216990.1
AGGACTAGTCAGAATCAGATGTTGTCCGAGACAGACATGCTGGTCAGGAGAAAATACAAGAGATACTCCAAACACAAGATCACCTACCTGGGCCTGATCGCTTATATCATCTGGAGAGCGCCTGAGAAGAAATTAACGTTTTACGAGTTAATGAACGCGGTGACGATATTTGTGGATGGAGACAGAAAAGGTCTTGAGAATAATATCAGAGTGTGTTTATCGTCAAACAAGTGCTTCGTGAAGGTGCCTATAAATCCGGGGTCCCCGAATGCAAAGCGCAACTTCTGGAGAGTGGACGAAAGTGAAATCACCCCGAAGATACTGCGACGACACTTCGGCGGCCTGCGCCACGTCTCCCCCGCGAAGAATGAAACGGAAACCGGGGTCATCACCCGCGAACCCCCCGCGGCGGAGAAGAAGTTCAGCGGGCCGTTTTCGATAGAGTCCCTTCTGCGGCGGGAAAACGGCGCCCCCTCGAGGATCACACCTGGAACCGGGAGACCGGAAAACGCGTTTGGGGGCCTCACGAATTTTGACTGGCCCCGTGCAGACTTCACCAGATCATATTCACACGTTTATTTTCCTATCTACAGTCTGGGCCAAACGAATGAGGCCTGCGGTCGCTCCAGTGGATCCTTCAAGAAGATGCACTCAGTCTCTGAAGCGTCTTACCGTACAGCTCCTGAGAGCATCAGCCCATTCAATCCAGCTGTGGCCCGGATGTAAAATGCACTTAACATACACTTTTGCTAATGTTACTAATTTGCTACGCATTGTTGAAAATATCTACCAACTCCTCATTTTcccaataaaaaaagtttgtttttaaactcaaGCGTTAGGTGGTGTGGGCGATCGgaagacat

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216990.1 True 866 mRNA 0.50 3 5613068 5614130

Neighbor

gene id symbol gene type direction distance location
LOC122323836 LOC107598234 coding upstream 41797 5569730 ~ 5571271 (+)
LOC122324215 NA coding upstream 80181 5531960 ~ 5532887 (+)
eya3 eya3,LOC107738590,LOC107731567,LOC107672865,LOC107702484 coding upstream 112472 5484922 ~ 5500596 (+)
si:ch211-195b13.1 si:ch211-195b13.1,LOC107738591,LOC107672866,LOC107702504,LOC107731568,LOC103036792,LOC108411161 coding upstream 129400 5471782 ~ 5483668 (+)
LOC122323295 NA coding upstream 188280 5407049 ~ 5424788 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding downstream 102566 5716696 ~ 5717681 (+)
col28a1a col28a1,LOC107754784 coding downstream 111238 5725368 ~ 5739185 (+)
LOC122323385 sdhaf3,LOC107702681 coding downstream 261920 5876050 ~ 5882974 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 447419 6061549 ~ 6162543 (+)
mylipa mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572 coding downstream 619895 6234025 ~ 6252339 (+)
LOC122324017 NA non-coding upstream 730 5610988 ~ 5612338 (+)
G130835 NA non-coding upstream 25553 5565380 ~ 5587515 (+)
G130833 NA non-coding upstream 64269 5548507 ~ 5548799 (+)
G130813 LOC107672812,LOC107598225,LOC107571454,LOC107738589,LOC107672867,LOC107731566,LOC107571461 non-coding upstream 107654 5503266 ~ 5505414 (+)
G130664 NA non-coding upstream 207502 5404453 ~ 5405566 (+)
G130855 NA non-coding downstream 134 5614264 ~ 5632428 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding downstream 45403 5659533 ~ 5670532 (+)
G130861 NA non-coding downstream 60165 5674295 ~ 5674844 (+)
G130890 LOC107731557,LOC107702657,LOC107568288 non-coding downstream 174436 5788566 ~ 5924971 (+)
G130899 NA non-coding downstream 184381 5798511 ~ 5934717 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 27413 5583505 ~ 5585655 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 298890 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 384842 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 433391 5176270 ~ 5179677 (+)
G130637 NA other upstream 449669 5162586 ~ 5163399 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 131671 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 171000 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 757705 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 848953 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 905790 6519920 ~ 6526080 (+)

Expression


Co-expression Network