tnfa (LOC107694347)


Basic Information

Item Value
gene id tnfa
gene name LOC107694347
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6515100 ~ 6517362 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217045.1
CTTTTCTGAGCACAGCACCGACAGACCAACCACCGAAGTGATAAACTGCGCTGAGGACACTTTACAAGACCAGTGTAACAGCGCtacaggttttttttgcagtagCTGAACTTGAGCTTTCGGGGGACTAACATACACAATGACGATGGATCTTGAGAGTCGGTTTGTTGAAGAAGGAGAGCCGCTCTTACCACAGGTGAAGGTGTCGAGGAGGACGGCCGTCTGGCGGGTGTGTGGGGTCCTGCTGGCCGTGGCCCTGTGTGCCGCCGCCACCGTCTGCTTCACGCTCAACAAGCCTCAGAACAGTCAGGAAGGTGGAAATGCGCTCAGGCTCACTTTAAGAGATCatctttcaaaagaaaatgtcacTTCCAAGGTTGCCATCCATTTAACAGGCGCATATGACCCTAACGTGTCTCAGGACAGCCTAGACTGGAAACAGAACCAGGACCAGGCTTTCGTTTCAGGCGGCTTGGAATTAGTGGACAGAGAGATCATCATTCCTAGCGACGGCATTTACTTCGTCTACAGCCAGGTGTCTTTCCACATCAGCTGCAAGAAGGACATGACCGAGGACCAGGACTCCGTTCACATGAGCCACGCCGTGCAGCGCTACTCCGAGTCGTACGGCAGCTACAAGCCGCTGTTCAGCGCCATCCGCTCCGCCTGTACGCACGCGTCTGACTCTGAAAATCTGTGGTACAACACCATTTACCTCGGGGCGGCCTTCAACCTGAGAGCCGGAGACAAACTATGCACCGAAACCACCTCCAAACTCCTGCACCGCGTCGACACCGGAAACGGAAAGACCTTCTTTGGGGTGTTTGCTTTATGATACGAACTCTAAACAAATGCCCAATAGCACACAATGTAACCTGCTGTGCTTATATGAAGGAACCTTCCGTTTTTCTTATTGTGGTTTACATGTATTTTGCACTGCATTGTGTTTTAGCTGACAGAAATGTGCGTAAAATTAACGGACAATGTCCAGGCGAAAAAATATCTAGTAGGCCtacattttccatttcttttacAGCGCAGCTGGATGTCAAGCAAAACTTGAAAAGTCAGAAAAGAATGGGGAGTGAAGCAGAGTTTCATGCTTCGCTTCTAATGCAATGACACTGATAAGACTGAAATGACTCCTAAtctatgttttatattaaaacaggtCGAAATCTGTAACGGATCAGATCCACAGATCCCGATAGCCACATCCATGCATTTTCAGTCCATGTTGAATCAAAgcaatccatttatttatatcgttttttgtttaatgaacgttaatattatatgtatttatgtctagcctatttatttaactatttattgaactatttattaaaagaatgaaaaactACTGCACTGCTACTGTAATgaaattcaaacatttaataaacatttgtaattcTA

Function

NR:

description
TNF-alpha3 isoform-2

GO: NA

KEGG:

id description
K05468 LTA, TNFB; lymphotoxin alpha (TNF superfamily, member 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217045.1 True 1416 mRNA 0.45 4 6515100 6517362

Neighbor

gene id symbol gene type direction distance location
nelfe nelfe,LOC107754803,LOC107584366,LOC107694353,LOC107677468,LOC107595590,LOC107711324 coding upstream 37950 6473609 ~ 6477150 (+)
LOC122323487 LOC107694355,LOC107754822,LOC107595588,LOC107711322 coding upstream 71972 6435232 ~ 6443128 (+)
gon4la LOC107754817,LOC107694363,LOC107584344 coding upstream 137501 6365518 ~ 6377599 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding upstream 153908 6346789 ~ 6361192 (+)
npr1a npr1a,npr1,LOC107694365,LOC107677481,LOC107754786,LOC107731544,LOC108435512 coding upstream 170840 6266383 ~ 6344260 (+)
ddx39b ddx39b,LOC107584302,LOC107754831,LOC107694345,LOC107595593,LOC103042292,LOC108272881 coding downstream 131937 6649299 ~ 6659826 (+)
atat1 atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600 coding downstream 187478 6704840 ~ 6716985 (+)
c19h5orf49 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 coding downstream 250279 6767641 ~ 6769745 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605 coding downstream 341707 6859069 ~ 6877006 (+)
irx4b irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627 coding downstream 516221 7033583 ~ 7038126 (+)
G131016 LOC107677454,LOC107595587,LOC107584310,LOC107694359,LOC107754821 non-coding upstream 105359 6405385 ~ 6409741 (+)
G131010 NA non-coding upstream 121143 6392916 ~ 6393957 (+)
G130950 NA non-coding upstream 180856 6331665 ~ 6334244 (+)
LOC122324219 NA non-coding upstream 251146 6255006 ~ 6263954 (+)
G130944 NA non-coding upstream 287013 6227746 ~ 6228087 (+)
G131093 LOC107694325,LOC107711328,LOC107754828,LOC107584304,LOC107677461,LOC107595615 non-coding downstream 121119 6638481 ~ 6639229 (+)
G131241 NA non-coding downstream 439207 6956569 ~ 6956786 (+)
G131245 NA non-coding downstream 459168 6976530 ~ 6976854 (+)
G131249 NA non-coding downstream 464588 6981950 ~ 6982175 (+)
G131252 NA non-coding downstream 496527 7013889 ~ 7014418 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other upstream 26340 6463083 ~ 6488760 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other upstream 113802 6371835 ~ 6401298 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other upstream 592127 5785130 ~ 5922973 (+)
LOC122323254 sdhaf3,LOC107702681 other upstream 762183 5745801 ~ 5752917 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 929445 5583505 ~ 5585655 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 2558 6519920 ~ 6526080 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 174612 6691974 ~ 6696204 (+)
G131183 NA other downstream 316507 6833869 ~ 6836858 (+)
med10 med10,LOC107691542,LOC107595625,LOC107584362 other downstream 383273 6900635 ~ 6902398 (+)
lpcat1 lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501 other downstream 529251 7046613 ~ 7066858 (+)

Expression


Co-expression Network