dlx6a (dlx6,dlx6a,LOC107670195,LOC107665661,LOC107731570,LOC107722133)


Basic Information

Item Value
gene id dlx6a
gene name dlx6,dlx6a,LOC107670195,LOC107665661,LOC107731570,LOC107722133
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12698137 ~ 12700611 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217057.1
GTTTATAGATTAACGACCGTATAAAAGTGACTTTGAAGTTGCACGCAAGGCAGTCGGAGTCGTGTTCCATCGGTTCGACGCTTTAAGCGTTCGCGGGGTTTGTTTTGGTGAGCGTTATCTGCCAGCTCCGCCGCGGTTACGAACCACGAGATTAATTACTTCGATGGCAGCGCGCGACATTGTTTCCGGAGTCGCGTACCCGAGCGGGAATTTAGTGAATATCGGAGGGATATCCCGGCATTATTATTCTCCACATGGTTATGGCTACGGCGGGAGCTGTTAAGGTAGGTTAACTCACTGTGAAGTCTCAGCTAAAGCAGAGAACTGATGACGTTAGGTTGAATGACCAATCGGAAGGCGCTGCCCTTTGGAGACAAACCATTTTACTTGTAGTGGCTGCATCAAGTCTGGAAGCAAGGACTCAAATTTAACAGAATCCACCTTAAAATCTCTGCCTTTACTCAAGCCCACCTTCCACCATACCGCGTGAGAAttacaggacaaaaaaaaggataaattgTGGAGGTAATAACGCAATATCTCCTAACcaaggagagaaagaaacgAACACAACGAAAGGACTCATTTGGACTTCGGAGATAGGGGGTAAGTGCTCTCAAAGCAGAAAATTTGATGATGACCATGACTACGATGGCTGACGGTCTGGAGGCTCAAGACTCGTCAAAATCTGCTTTCATGGAGTTTGGACAGCAATCGCACTCACAACAGAGCTCCCCGTCGATGGCCGCCAGCCATTATCCGCTCCACTGTCTCCATTCCGgctctcatcatcatcatcagcacgACAGCTCTCCGTACTCCGGATCGAACTCCTATAACAGGTCGCTACCTTACTCCTATGTAAGCCATCCCCACCACAGCCCGTACCTGCCGTCCTACCACAGTAACTCCAGCGGAGCACAGACCAGGTTAGACGCCACAGAACAGCAGAAAACGACAGTGATTGAAAACGGAGAAATACGTTTCAACGGAAAAGGCAAAAAGATCAGAAAACCGAGGACGATTTATTCCAGTTTGCAGCTCCAGGCGCTAAATCACCGTTTCCAGCAGACCCAGTACCTGGCGTTACCGGAGCGCGCGGAACTGGCTGCGTCCCTCGGGCTCACGCAGACGCAGgTAAAGATATGGTTTCAAAACAAAAGGTCCAAGTTTAAGAAGTTGTTGAAACAAGGCGGTAACCCCCACGAGAGTGACCCTTTGCCTGGATCCATCGCCCTGTCCCCGCGCTCCCCAGCCATTCCTCCTATCTGGGACGTCTCAGCCTCCTCTAAAGGAGTAAACATGTCTGCTAACAGCTACATGCCCGGTTACTCGCACTGGTACTCCTCGCCTCACCAGGACGCCATGCAGAGATAGGCAACTagtcgttttttgtttttaggacaGAGGCCTTGTTGACATCCTGTCTTCGCCCAGTTCACGTGCGCTAGGACGCACTTTGTCACCGGCTCGATAGAGACATATTCTGGCCTATTAAGGGGACGATTTCTTTTGAAGAACGAAGACGTGGTGCGGCGAAGGTCAGCAGTGGAACTAACTGTCAGTAGCATCATAAACAGAtcgactaaaaaaaaaaatctgttctcACGTTtgactctaatcaaacacattcATCGCCGACGTGAAACCAGAACGGGAAGCTAAACGTTTTGTCGCATCAGGCGCGCGCGCACGCGCTCGAGTCGCGTTTGAAAACGAACTCGAAGCTTTTGGGTAGATGTTTCTGATCATGCAAATCCGAGCAATTCGATTGTAAATATATTGTCCGATTTTAGTTGTcaaaaactttttatgttttgtcatAAATGGAGTAAACATGACTTCAA

Function

symbol description
dlx6a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within medial fin morphogenesis; neural tube formation; and pectoral fin development. Predicted to be located in nucleus. Is expressed in brain; head; and otic vesicle. Orthologous to human DLX6 (distal-less homeobox 6).
dlx6 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including embryonic morphogenesis; positive regulation of epithelial cell proliferation; and roof of mouth development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: homeobox protein DLX-6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09314 DLX1_4_6; homeobox protein DLX1/4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217057.1 True 1847 mRNA 0.49 3 12698137 12700611

Neighbor

gene id symbol gene type direction distance location
LOC122323728 dync1i1,LOC107731605 coding upstream 77117 12569233 ~ 12621020 (+)
asb4 asb4,LOC107722148,LOC107670212,LOC107731816,LOC107665668,LOC107577102 coding upstream 142010 12552083 ~ 12556127 (+)
ppp1r9a ppp1r9a,LOC107669756,LOC107722146,LOC107731638 coding upstream 149298 12504438 ~ 12548839 (+)
casd1 casd1,LOC107722141,LOC107665666,LOC107669810,LOC107731667,LOC107591593 coding upstream 201005 12487781 ~ 12497132 (+)
col1a2 col1a2,LOC107722140,LOC107669816,LOC107667770,LOC107591591,LOC107731699 coding upstream 212424 12468916 ~ 12485713 (+)
ago2 ago2,LOC107722143,LOC107593532,LOC107591597 coding downstream 6656 12707267 ~ 12726366 (+)
crtc2 LOC107722160,LOC107593533,LOC107669709,LOC107665671,LOC107731562,LOC107591598 coding downstream 27855 12728466 ~ 12736517 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108424704,LOC107593575,LOC107670070,LOC107722127,LOC107731740,LOC107665655 coding downstream 38986 12739597 ~ 12761128 (+)
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding downstream 93366 12793977 ~ 12829799 (+)
tinagl1 tinagl1,LOC107706169,LOC107593537,LOC107669690,LOC107731519,LOC107696600,LOC107591600 coding downstream 141771 12842382 ~ 12862088 (+)
G132472 NA non-coding upstream 29583 12667293 ~ 12668554 (+)
G132448 NA non-coding upstream 140935 12556964 ~ 12557202 (+)
G132421 sgce,LOC107722147,LOC107731676,LOC107665667 non-coding upstream 197596 12499142 ~ 12500541 (+)
G132376 NA non-coding upstream 300776 12378273 ~ 12397361 (+)
G132379 NA non-coding upstream 309524 12385052 ~ 12388613 (+)
G132498 LOC107593576,LOC107731729,LOC107706171,LOC107696598 non-coding downstream 86033 12786644 ~ 12865595 (+)
LOC122323456 NA non-coding downstream 131030 12831641 ~ 12834525 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding downstream 401338 13101949 ~ 13102925 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding downstream 418105 13118716 ~ 13123966 (+)
G132549 NA non-coding downstream 425266 13125877 ~ 13126617 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 273059 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 585240 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 1174256 11522229 ~ 11523881 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 2280041 10415640 ~ 10418096 (+)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other upstream 2944581 9734220 ~ 9753556 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other downstream 320806 13021417 ~ 13026026 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 608816 13309427 ~ 13336749 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 2086933 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 2133990 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 2377843 15078454 ~ 15192566 (+)

Expression


Co-expression Network