xkr8.3 (LOC107598214,LOC107731550,LOC107702601,LOC107738589,LOC107672867)


Basic Information

Item Value
gene id xkr8.3
gene name LOC107598214,LOC107731550,LOC107702601,LOC107738589,LOC107672867
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5523080 ~ 5527170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217058.1
AAACAcggaattcatttttttatttacatgcattttaatgtggcAACCCGAAATATCCGCACGTTCCTAGCGGCAGCGTGTGACGTCGTGCGGGCGTGACTTAAGTTGCGGCTCACATCTGTGAAAGTTTGCGACTTTTACGCGATAGAAAATGTCATCGTGTATCTGCTGCCGTAGAGACGGCTTTGAAGAGAAGAGGCGGGCTTTCTCGTGGATTTCTCGTTTGCACGAGTCGACGGTTAAGTGAAGGTCGACGCGTTCGCGGGGTTGTATTCGCTTTGATTAACGGTACGCGGGGCTACATGCTCGCGCTGGCCGAACTTCGGCGCGCCGCTTCGGCTGTGAAGCTCGCCCCACGATGAACTGCGCGAGGTTCCCCGAGTACTCGCTGCTGGACCTCTTCTTCACGCTCTTCGGCGTGTGCACCTTCCTGTTTGACGTGGGCTCGGACCTGTGGGTGGCCAAGGAGCTGTACGTGCTCGGGGAGTTCGCGTGGTTCGGGGTTTTGCTGGGCTTCATGCTCGTCTCGTCGGCCGTCGTGCAGCTCTTCAGCTGGTTTTGGCTGCGGTATGATCGCGATTTGAAGGACTTTGAAACTCAGGCGTCCGACGGGAACCTGGTTCTGTTCAGCGGAACGAAaagaattaaattattgcttttccTGCATGTGTGTCAGCTGGGCTTCTTGGTCAGgcACGTATCAGCTATCTGGCAGGGTTTTCGTGTGTGGTGGCGTAAAGGCTGTGGCTCGGAGTATGCCGTTTATCTGACCCATGACCTCAGCATGCTGCGACTCATTGAGACGTTCTGTGAGAGCGCACCGCAGCTCACCCTCATGATATACATCATGCTGCGCAGCAATCACGCAAGACTGGTCCAGTATGTGAGTGTGGGCGCCTCCACTACCTCTATAGCCTGGATGGTGGTGGATTATCATCGGTCGCTTCGTTCGTTTCTGCCCGATAAGGACAAGCAAGGTTGGTTATCATCTGTGGTGTATTTTTTCTGGAACCTCTTTCTGATTGGTCCACGTGTGGCTTCGATTGCCCTCTTTGCCTCCGTGTTGCCCTGCTTCATCGCTGCTCACTTCCTGCTCCTGTGGCACGTCTTCGTGATATGGGCCTGGAGGCAGGGCACGGACTTCATGGACAGCCCAGCGGGGGAACGGCTCTACCGGGCCACCGTAGGGCTCATCTGGTACTTCAGCTGGTTTAACGTGGCTGAAGGAGACACCAGAGACAGGAGTCTGATCTACCACGTGTTTATAATCACAGACACCGGCATCCTGTTGAGCACATGGTGGCTGTACCGCGATGCAGAGATGACTCAGTCGTATGCCTTCAGTCTGATAATCTCCATCCCGCTTTGTTATGTCTTGGGACTGTTGATAAAAGTTCTGTATTATTGCTGTTTTCACCCCAAACTGTGGCGGAGGCCAGGTTTGGGAAAAGCTTCATTTGATGTAACGGATGGAGTGGAGCTGCCTGTAGATGTTCAGACTGATGGTGCTTCTCTTCAGATCTTTAACAAGAGGATGGGCCAACATGCTGCCAACTTCTACACAACAAACACTTTATCTGCAGTTAAAACAACTCATCTATCAGTACTGTAAAAGTCAATGGTATTTAGCTTGTTAGATTGTTACAGATATGCTGTTATTTGTAAATTCTTTTAGTGTTGTTAGAAATAATGTTACCGTTaattaata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217058.1 True 1708 mRNA 0.51 3 5523080 5527170

Neighbor

gene id symbol gene type direction distance location
LOC122323471 LOC107738589,LOC107571461,LOC107672867,LOC107598215,LOC107731566,LOC107702687 coding downstream 3246 5515027 ~ 5519834 (-)
LOC122323472 LOC107598215 coding downstream 12424 5506052 ~ 5510656 (-)
LOC122323473 LOC107672812,LOC107598225 coding downstream 18675 5501265 ~ 5504405 (-)
LOC122324255 NA coding downstream 118180 5404769 ~ 5404900 (-)
si:dkey-154b15.1 NA coding downstream 119949 5398274 ~ 5403131 (-)
ptp4a3a ptp4a3,LOC107702466,LOC107571462,LOC107598212,LOC107731571,LOC107738588,LOC108272580,LOC103031245 coding upstream 59367 5586537 ~ 5609859 (-)
rims3 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107571463,LOC107731575 coding upstream 87098 5614268 ~ 5670371 (-)
glcci1a glcci1,LOC107702447,LOC107731573 coding upstream 148315 5675485 ~ 5705310 (-)
umad1 si:dkey-119m17.2,umad1,LOC107598207,LOC107568281 coding upstream 178979 5706149 ~ 5716287 (-)
LOC122323412 c1galt1,si:dkey-202e17.1,LOC107702589,LOC107568284,LOC107754798,LOC107731548 coding upstream 212149 5739319 ~ 5744577 (-)
G130827 NA non-coding downstream 114 5520939 ~ 5522966 (-)
G130804 NA non-coding downstream 82215 5440426 ~ 5440865 (-)
G130801 NA non-coding downstream 89151 5433562 ~ 5433929 (-)
G130764 NA non-coding downstream 169818 5345595 ~ 5353262 (-)
G130768 NA non-coding downstream 248159 5271840 ~ 5274921 (-)
G130880 NA non-coding upstream 147384 5674554 ~ 5674878 (-)
G130914 NA non-coding upstream 218678 5745848 ~ 5876713 (-)
G130920 NA non-coding upstream 225415 5752585 ~ 5883367 (-)
LOC122324223 NA non-coding upstream 311623 5838793 ~ 5847759 (-)
G130955 NA non-coding upstream 579969 6107139 ~ 6162535 (-)
LOC122324254 NA other downstream 117444 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 262916 5141505 ~ 5260164 (-)
G130763 NA other downstream 270891 5245353 ~ 5252189 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 300197 5087244 ~ 5222883 (-)
G130696 NA other downstream 581248 4743572 ~ 4941832 (-)
G131006 LOC107754818,LOC107731580 other upstream 835177 6362347 ~ 6363172 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other upstream 1100428 6627598 ~ 6639220 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other upstream 1121220 6648390 ~ 6649389 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 1323199 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 1829451 7356621 ~ 7360143 (-)

Expression


Co-expression Network