LOC122323313 (ext1c,LOC107706241,LOC107654729,LOC107592050,LOC107754264,LOC107592945,LOC107688378)


Basic Information

Item Value
gene id LOC122323313
gene name ext1c,LOC107706241,LOC107654729,LOC107592050,LOC107754264,LOC107592945,LOC107688378
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15211167 ~ 15226683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217059.1
TTGTTAATTTCTCTGCTAGGCTAACGCAGAGGGGATTCACTGAGCCATGCAGAGAGAAGGACTACCAAGAGAGGAGAAATTGCACTGCATCACTTCCAGCGGACGACAGCGGAGCACACACGTACTTCTGCCGCGTGGGCTTACCGTCCTCTGAACAGACAAGCCAAACGGAGAAAAAGAACGCATTCGTGTCACTGGTTGTCGCTGATGGACAAGTGGACACTGGTGCTATGCTGGAGCTTCGGCCCCTGCTGTCCATCCCGTCTCCCCCCTGCTGAAGCTCCCGGGACAGCCCTGGAGCACAGAGGGTGAGAGAGACGGCCTCATGCAGGCACGCAAGAAGTACGTGCTTCTGGGCCTGTGCACGTGCTGCTGGCTGCTGCTCTATTACTGGGGTGGCTTGCAGGAACGGCTGCTGGGTCTCATCACCCACAGGAGGGGGGAGGTGGCCAGGCCCTGGCCCAACTGGTTGGATCGGGACCTGCTCCCGGGTTACGCCGACCAGGCCGAGCTACAAAATGCCGGGGGTCCGGGTGACTCGCCAAGGCAGCGGCGGCAGTCGTGGGCCGGAATCTACAAGGACAGTCGCTGCAGGATGGACACCTGCTTTGACTTCGCCCGATGCCAAGGGCAGAGCGGCTTTCGGGTCTACATTTATCCGCCGGAGAAGGGCGAGCGGGTGTCCGAGAGTTACCGCAAGATCCTCACCTCCGTCGCAGAGTCGCGGTATTTCACGTCGGACCCTCGAGAAGCATGTTTGTTCGTGCTGGGCATCGACACGCTGGACAGGGACCAGCTTTCGACGCAGTTCATGCCCAACATGGACGAGCGAATTCGAGGTTACCCGCTCTGGAACGACGGGCGGAACCATGTCATCTTCAACCTTTATTCCGGAACCTGGCCCAACTACACCGAGGACTTGGGTTTTAACGTGGGCCAGGCTATCCTGGCCAAAGCAAGCCTGAATACGGAACACTTCCGACCGGGTTTTGACATTTCCATCCCTTTGTTCTCTAAAGAACACCCTCAGAAGGGTGGAGAGAGAGGCTGGTTAGTTCGCAACACCGTCCCGCCGAGACGGAAGTACTTGTTGATGTTTAAAGGTAAACGTTACTTGACGGGCATTGGCTCAGACACTCGCAACGCTTTGCATCACATCCACAATGGCAAGGACATTGTCTCCCTAACAACGTGCCGCCACGGCAAGGACTGGGAGAAGCACAAGGACGCTCGGTGTGACCATGACAACCAGGAGTATGAGAGgtaTGACTATCGTGAAATGCTGCACAATTCCACCTTCTGTCTGGTTCCCCGAGGACGACGACTGGGATCCTTCCGCTTCCTTGAGGCTCTGCAGGCGGCCTGTGTGCCGGTCATGCTGAGTAACGGTTGGGAACTCCCCTTCTCGGAGGTCATCGACTGGAACACGGCTGCCGTGATCGGAGACGAGAGGCTCCTACTGCAGGTCTGA

Function

symbol description
ext1c Predicted to enable N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity and glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in Golgi apparatus. Is expressed in brain; fin; otic vesicle; retina; and somite. Orthologous to human EXTL1 (exostosin like glycosyltransferase 1).

NR:

description
PREDICTED: exostosin-1c

GO:

id name namespace
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0050508 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity molecular_function
GO:0050509 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217059.1 True 1471 mRNA 0.58 3 15211167 15226683

Neighbor

gene id symbol gene type direction distance location
cdca8 cdca8,LOC107591982,LOC107592949,LOC107654740,LOC107754257,LOC107688370 coding upstream 249597 14958607 ~ 14961570 (+)
cldn35 LOC107591984,LOC107654683,LOC107592950,LOC107754258,LOC108430542 coding upstream 254222 14953377 ~ 14956945 (+)
ago4 LOC106511154,LOC107591980 coding upstream 259495 14935159 ~ 14951672 (+)
tfap2e tfap2e,LOC107654734,LOC107688421,LOC107706245,LOC107754262 coding upstream 304460 14897549 ~ 14906707 (+)
ncdn ncdn,LOC107706243,LOC107654732,LOC107754263,LOC107688377,LOC107592947,LOC107585609 coding upstream 314723 14892389 ~ 14896444 (+)
LOC122323516 LOC107706254,LOC107654743,LOC107710329,LOC107688368,LOC107602377 coding downstream 5380 15232063 ~ 15276474 (+)
LOC122324124 LOC107706255,LOC107654747,LOC107591987,LOC107688367,LOC107710332 coding downstream 87174 15313857 ~ 15319770 (+)
crybg2 LOC107654746,LOC107706257,LOC107592054 coding downstream 100984 15327667 ~ 15350247 (+)
sgo1 LOC107654748,LOC107706259,LOC107688364,LOC107592057,LOC107578328,LOC107602351,LOC107710334 coding downstream 144621 15371304 ~ 15376482 (+)
trnap-agg_21 NA coding downstream 152787 15379470 ~ 15379541 (+)
LOC122324050 NA non-coding upstream 175745 15022275 ~ 15035422 (+)
G133068 NA non-coding upstream 453191 14757624 ~ 14757976 (+)
G132916 NA non-coding upstream 628751 14175839 ~ 14582416 (+)
G132913 trps1,LOC107706219,LOC107592043,LOC107754280,LOC107696539,LOC107562946 non-coding upstream 1042683 14168095 ~ 14168484 (+)
G132910 NA non-coding upstream 1104906 14097276 ~ 14106261 (+)
G133129 NA non-coding downstream 147817 15374500 ~ 15378019 (+)
G133253 NA non-coding downstream 233655 15460338 ~ 15460706 (+)
G133256 NA non-coding downstream 255315 15481998 ~ 15483517 (+)
G133265 NA non-coding downstream 322161 15548844 ~ 15549137 (+)
G133276 NA non-coding downstream 356522 15583205 ~ 15606585 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other upstream 18601 15078454 ~ 15192566 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other upstream 373198 14834601 ~ 14837969 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 1874418 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 2185141 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 2786089 12423290 ~ 12425078 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 82044 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 128925 15355608 ~ 15361845 (+)
cckb cck,LOC107592091,LOC107654691,LOC107706167,LOC107688363 other downstream 194452 15421135 ~ 15424497 (+)
G133266 LOC107748647,LOC107591995 other downstream 342981 15569664 ~ 15577981 (+)
aste1b aste1,LOC107654763,LOC107688353,LOC107710346,LOC107580865 other downstream 393576 15620259 ~ 15626187 (+)

Expression


Co-expression Network