smarcc1b (smarcc1b,LOC107748646,LOC107654761,LOC107688355,LOC107710344)


Basic Information

Item Value
gene id smarcc1b
gene name smarcc1b,LOC107748646,LOC107654761,LOC107688355,LOC107710344
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15578624 ~ 15587712 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217063.1
ATGGCTACACAAGCGCCAGGCTCTGCTGCTGGACCTACGATGAGTCAAGCCGGTTGTAGCTCTTCGCTGAGTCGAAGAATGGACGGTGGGCCGTGCTGCAAATTCTGGGAAAGCCCGGAAATAATCTCTCAGTTGGAGACGCATGTACAATCTGATGCTCCCTCCAGCAAGTCTCTGTCTGGGCTGGTCATCCAACTGCTGCAGTTTCAGGAAGATTCGTTTGGCCGTCGAGCAAATAACCCAAGCTTTACAAAACTCCCAGCAAAGTGTTTTCAGGACCTAAGGCCGGGCGGTGCTCTCTGCTATATTCTAGGATCAGTGTACAAGTACAAGTCAGAACAGGGCTGGAGACGCTTTGATCTTCAGAACCCGTCAAGAATGGATCGCAATGTGGAGATGTTCATATCTGTGGAGAAAACACTGACACAGAATAACTTATTGAGCAGACCTGTGGTGCACTTGTCTCCTGATCTTGAGCAGAAGCAAGCTCTTAAACTCAAAGACATTGTTGTGCGACACCAGGGCACAGTAACAGAGGAGAAGTCACAAGCCACCCATCAAATATACCCATCCCCCTCCACATCAGACGAAGAAGAGTGGCTTAGACCAGTCATGCGATTGGATCGGCAAGTGATGGTGCATTGGGGCATGTGTCCAGACAGttACGACTCGCTTATATCAGCAAGTGATGTAGATGAAGAAGTAGAGGAACCTCCCAACGCAGACAGGTGCTGGAAGgttCATCCCAAGTGGGTTCTCGACACAGACATATATAATGAGTGGATGAATGAGGAAGATTATGAAGTCGATGAGAATGGGAATAGTATGAGTTTCAGGCGGCGTATCTACCAAAGCACAGAGGAACAGAAACCTGTAAAGAAGCGGCGACGCTTCCCGTCTCCACCTTCTTCTGAGTCTAAGAAGAAAGGAGGAAAGAAAAGCTCAGGTGTGTATAAGAGGCGTGGTCAACCGGAGGAAGCGGAGCCAGAGGAGGACCTCACTAAAGACATGGAAGATCCCACGCCTGTCCCTAACATGGAGGAGGTCATTCTGCCTAAAAATGTGAACCTAAAAAAAGACAGTGAAAACACTCCAGTCAAAGGAGGCATTATGGCTGATTTAGATGACCAGGAAGAGGACCTGCTTTCCGGTGTCAGAGATGAAGAGGAGCAGAGGGAGTTCAGCCGTGGGATGGAGGGGGAGGAGAGTGCCACAGAGCAAACGCATCACATCATTGTGCCCACCTATGCCTCCTGGTTCGACTACAACTGTATTCATCAGATAGAGAGACGAGCTCTGCCTGAGTTCTTCAATGGGAAAAATAAGTCCAAAACACCAGAAATATATCTTGCATACCGCAACTTCATGATTGATACATACCGACTAAACCCTCAGGAGTATCTGACCTCAACCTCCTGTAGACGAAACCTGACAGGAGATGTGTGTGCACTTATaagGGTTCATTCATTTTTGGAGCAGTGGGGGTTGATCAACTACCAGGTAGACGCAGAAAGTCGACCCCTTCCCATGGGCCCACCCCCAACACCACACTTTAATGTTCTCACAGACACACCATCTGGACTCGTCCCATTACAGCACAGACCCTTACAGgTTTCCGCTTCTCAGCATATGTTGCATTTCCCAGAGAAATTGAGAGAAAAACCATCTGACCTGCAGAACTTTGGTCTGCGAACTGATATTTATGCTAAAAAACATCCAAAGaGTAAAGGCGCAAGTGCAGGGAGAGAATGGACAGAACAGGAAACACTCTTACTTTTGGAGGCTTTAGAGATGTATAAAGATGACTGGAATAAGGTTTCAGAGCATGTGGGCAGTCGCACACAAGACGACTGTATTCTTCATTTCTTACGGTTGCCCATAGAGGACCCATACCTAGAGAACTCTGAAGCCTCAATGGGTCCTCTGGCCTATCAGCCTGTCCCTTTCAGCCAGTCGGGGAACCCCGTAATGAGCACTGTTGCGTTCCTTGCATCTGTGGTTGACCCTCGAGTGGCCTCTGCGGCCGCCAAAGCAGCTTTAGAGGAATTCGCAAGAGCAAGAGAAGAGGCCCCGCCAGAGATATTCAGTGCCAGCTTTCACAGAACACAGAGACTTGGGCATCATCTAGATCCAGCCTTTACACTCCAAACGGGCAGCATTGCAGGACTTGATCCCGACAGTTCGGAAAAGACCGatGGGAGTGTTATAGAAACAATGAATGCTGAATATGAGCAGCATGACAAGCTTGAGGGTGACAGCATCTTGGGAGAGGGAGAGCGCGTGAAGAACGAGGAGAAAGAAGAGAGCGAAGGAGAGAGGGGAGAGGAGAGCACAGCAGAGGAGAGTTTTGACATGGGCCTCAGCCAAGGAGATGGGGAGGAGATGAAGAGGAGGGTGGAGCTTGAGGTGGTGGAGGGAAACATCACCACAGCTGCTGCTGCAGCACTGGCCTCCGCAGCTACCAAAGCAAAGCACTTGGCTGCAGTAGAAGAAAGGAAAATCAAATCTCTGGTGGCTCTGCTGGTTGAGACTCAGATGAAAAAGCTGGAGATCAAACTGAGACACTTTGAAGAGCTGGAGACCATTATGGATCGAGAAAAAGAGGCTctGGAGCAGCAGAGGCAGCAGTTATTGTCGGAGAGGCAGAACTTCCACCTGGAGCAGGTGAAATATGCCGAGATGAAGGCACGACAGACCGTGGAACAGCAGCAACAAACAGGAGCTacacagagcagcagcagcagcacagcgTACAACCCTCTTCACCACGGGCGTTCGGTGAGCAGTGCTGCTACAGGACAGGTCATAGGTGCTCGGCACTCTGGAGCTCCTAATGGCATGTACCAAACTCCACCGTCCTCACAGGCCGATGGGGGCACACCCATGTAATGACTTCAACGCCTTAAGACTCAAACTCAGCAAGATGACATGAAGGACTCGGTCGCATCATTATTCACATTCACCTTTACAATAGCACTTtcttctgtgtatatttaatattttttaagcattgaGGCTAGCATATAAGGGTCAGATTTGAGGCTTTTCGTTGCCATATCTGTCTGTACTTAATGTTTGTAGATCCGTTTTTGTATTGCCACCAAAtactaaaacatttgttttagtaAGAATAAATCTTTTATATGAAGTTATAA

Function

symbol description
smarcc1b Predicted to enable histone binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and positive regulation of transcription, DNA-templated. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Orthologous to human SMARCC1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1).

NR:

description
PREDICTED: SWI/SNF complex subunit SMARCC1-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11649 SMARCC; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217063.1 True 3155 mRNA 0.49 29 15578624 15587712

Neighbor

gene id symbol gene type direction distance location
cspg5b LOC107748647,LOC107591995,LOC107710343,LOC107688356,LOC107602387,LOC107654760 coding downstream 1386 15558513 ~ 15577238 (-)
dync1li1 dync1li1,LOC107591989,LOC107654754,LOC107706262,LOC107688360,LOC107710339 coding downstream 69327 15497597 ~ 15509297 (-)
LOC122324175 cfap44,LOC107706146,LOC107580614,LOC107688389 coding downstream 124098 15439355 ~ 15454526 (-)
trak1b LOC107591988,LOC107710336,LOC107654751,LOC107688362,LOC107706145 coding downstream 139173 15426201 ~ 15439451 (-)
trnap-agg_22 NA coding downstream 193358 15385195 ~ 15385266 (-)
LOC122323317 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107563697,LOC107656642 coding upstream 1279 15588991 ~ 15596283 (-)
LOC122323318 NA coding upstream 10943 15598655 ~ 15604091 (-)
wipf3 sb:cb649,wipf3,LOC107592062,LOC107602389,LOC107688351,LOC107592063,LOC107654765 coding upstream 48951 15636663 ~ 15642457 (-)
creb5a creb5a,LOC107748653,LOC107592000,LOC107710349,LOC107602393,LOC107654766,LOC107688348 coding upstream 73971 15661683 ~ 15668966 (-)
tax1bp1a tax1bp1a,LOC107654769,LOC107592002,LOC107710350,LOC107748654,LOC107688347 coding upstream 97442 15685154 ~ 15702155 (-)
G133315 NA non-coding downstream 97422 15480332 ~ 15481202 (-)
G133313 NA non-coding downstream 154126 15413975 ~ 15424498 (-)
G133226 NA non-coding downstream 194509 15383847 ~ 15384115 (-)
G133190 LOC107654743,LOC107706254 non-coding downstream 301221 15190805 ~ 15277403 (-)
G133143 NA non-coding downstream 740671 14836460 ~ 14837953 (-)
G133361 NA non-coding upstream 37613 15625325 ~ 15626280 (-)
G133370 LOC107710351,LOC107688346 non-coding upstream 84470 15672182 ~ 15673003 (-)
G133375 NA non-coding upstream 93373 15681085 ~ 15681626 (-)
G133376 NA non-coding upstream 94046 15681758 ~ 15682073 (-)
G133387 NA non-coding upstream 165718 15753430 ~ 15754646 (-)
G133217 NA other downstream 208888 15366434 ~ 15369736 (-)
zgc:114119 LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983 other downstream 686706 14887528 ~ 14891918 (-)
G133132 NA other downstream 794201 14784188 ~ 14784423 (-)
G132785 NA other downstream 2070171 13507664 ~ 13508453 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other downstream 2076254 13494830 ~ 13502370 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other upstream 57150 15644862 ~ 15648579 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other upstream 72207 15659919 ~ 15660720 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other upstream 149235 15736947 ~ 15740329 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other upstream 334511 15922223 ~ 15924285 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other upstream 693245 16280957 ~ 16508595 (-)

Expression


Co-expression Network