LOC122323324


Basic Information

Item Value
gene id LOC122323324
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18190993 ~ 18220415 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217070.1
CTTTTGACAGATAAGATGGGTTCATCACTAGATGAAGAAAGCTCACTTGCAGCCAGCGAGGTTGACATTGTGTCAGCTGTAAATTCTCTTCAGGTGTCAGACACACCGAGACCAGACGGCATCCCCGTTTCCTTCTATAAAGACAACATTCAGGATTTAATTCCACACTTAAAGATGCTTTATGAAAGAATCCACAGAGGTGCGTTTAACTGCTCTGAGAAGCACTTTAATGAAACTGTGAAAAGTCCACATGACAATAGTCAACAATTCTTTAACGTTGACTACCTCATCATTGCAACTATTCTAGCAAGAAGTTTAGAAGATGTCATGGCGTCTCTTCCAAAGGGGAGAATACTGAAAGATTCAGCAACTCTTATGATCATTCCCAAAACACATTATGCTTTAATAAGTTTAAGTCATGTTAAGGATGaactgaaacaacaaaaacagtccAACCCAACTCTGAGCCAAGATCTTGTCATTATAGAAAACCTTCTCAGTGACGCAAACCAAGATTTTTCAGTTGAGAAATACAAAGTGCTGCATCAGGCCTGCCCTTTGACCACAGAACTCATTACACTGGCTCTAAAAAGCTATGGCTCACAGATATTTGGACATTTAGAAAACGTTggggtttttattttcaaacaaagtGTGATAGTTTGCTTTCAACCCGAGGATCTAGATAAAGTCAAAGCTACTATGGAGGACAGTACTAATGAATTATACGAAATGGAGATATTATCCAGAGGAAATGATGAACTTTTACAATTAAACTGCTTAGGAAATGATTGTAAGGATGAAGATTTTGATGAATGGGACATGGAGGAATCTctgattaataaagaaaattgtCCTGATGAAAGGGATGATGGTACTGAAAATAAGtctaaaatatatcttaaagaTGAACCAATGGATCTTGATGTAAGGTCAATTTCTGCAACACCAGAAGAAGAGATGAAGAGGAATACACCTCCACTGCTTCCAGTACCATCAAGCTCTACAACCTCTTATGGTACTAAAAGAAAACGAGATCTTGAATCATCTGACTGGAGTATAGAGACACCACTGACAACAGATATGATCATGGAAAAAGCAAGACAAATTCTGCAAAGAATCAATAAGTCAGATCAAATCGATAAAGACAGACGGAAGAAGGCAATCATAGGGATTTTTGGAAAATCGGGACAAGGAAAAAGCTCTCTTTTAAGTGCAATCTTGGGGAAAAAGGATCTCTTACCGTCTGGTTGTTTTGGTGCCTGTACAGCTGTTGTTACTCAGGTGGAAGCCAATATGACcgactccaactacacagcagaGATCGAATTCATCTCTAAAACGGAGTGGGAAGAAGAGCTCAAAGATATGGTTGGAGATctaaaagatgaaaatgagGACAGGAATGAGGACTTTAGTGAAACGGCTGTAGAAAAGATAACTGCATTGTATGGAGCTGATGCAGACCAGAAAACATTAGAAGAGCTTCAGGTTGATGAAAAATTTGCTGAGATTAAAAGCTTTTTGTCTCTCCGTAAGAAAATAATCTCAAACAGCGATGTCTCTAAATTCGCCAGCGATGTTGGAAGTTTCATACAACACAGTGCGTCAAATCCTGGCGGCTGGTTCTGGCCGCTGGTGAAGAGCGTGACCATCAAGATACCAGACTGTCATGAACTCCTGGAGCACATTGTGCTTGTTGATCTTCCTGGGACTGGAGACTgcaacaagataagaaatgaccTGTGgaaatctAAACTGGCAGAGTGCTCTTTTGTGTGGATTGTAAATAATATCCAGCGAGCGATCACTGATAGAGAACCCTGGGGTATGTTGAAGCACTGCATTGAAGAACTGGGACCAGGAGGAAAATGCAAAGGCATTAACTTCATCTGCACAAAGACTGATGACATGAATCAACAAGAGTATATGAGATCTATACGGCTTCCAAAAGACCAAATCCCAAAAGACAAGGATCAGAAACGGCCATGCATACTTCATAGAAATGAACTTGACAAAACAAGGGTCAAAGAAAAGTTTGACAATTCTGAAATCAAGaaaatattcaaCACTGAAAATCAGTTTCAAGTTTTTACTGTGAGTTCCAAAGCATTCTTTGACCATAATTTAAATCTGGAATCAAGTGAAACAGaAATCCCAAAGCTGCAGGATGATCTGAGGAATCTTAACAAGAGCATTAACAGAGAACTGGCCAGAGATTATGTCAATAAAGCAAAGGGAGCAGTGCTCTTAGTCCAAAGTGGCCTGATGAAAATAGACAAGAAAATGATTGAAATTAAAGTCAGCGAATTTAAGAACAACCTAAAGGAGTCACTAGATGAATTGGATGAATATTTTGACAGCATTTATAATGATCTGGAGCGGCATCTCTCCGAGGGAGTTAAAGAATCAATAAAATCATGTGTTGCTTCCACAACAGAATTAATAACACCCaataAAACTAGAAGAGGGTTCCATAAAGTCCTTGGAGCTTTGTGCAAGAACTACGGATATTACTGGTCAAAAAATCGGGAGGAATTTCGAGACCTGAACAAGACATTGGccaaaaaaatccataaatgtatttatagcgATTTCTGTCAGATTTTCCCTGTGGCTGGGAAAACAGGGAAATCAGTGCAGGAACAGATTGATCAGTTCAGTATCATCCAGAATGATTCTGCTTACCTCAGGTCTGACGTACTTCATTACATTCAGAACTTCATCCAAACCGAGGAAATCAAACTGAAGGCAGCACTCAACATATACATTGTTGACTCGAAGAAGCAAATCCACTCATCAGTACAACTAACAATTATGGAAGAAATGGCTACTTGCTATAAGCgagcTGCAGCTGTGAAAGGAACGGGATCCTTAAAGAGAATGCAAGACCTCTTAATAACCACAGTTgatgagaaaaaacaaatcatgttCAACAAAGCAAAAATGGAAATGCTAAAAAGTCTGACTGACTTAAAGCTGATGGTGAAGGGGGCTCTTGAAAAACACTTACAGGAAGCAATAGAACGCTCACAATCCCAAACCAGCAAAAAGTCAAAGATGGATTTCTCCAGAGAGGTTGAGGAGCTTGAGACACTTCTACAGCAACTGTCTGACAAGAAGGATAGGAGATCCACGGGTTACAGGAGTTCAAGACAAgaaCCTTCAAGACATCCTGCAATGGCTCAACAAGGTGCTAAAAGAAAGCGGCATTCTGAATCATGTGACTCAGACACACCACTGACAATAGATGTAAGGATCACAATGAAGGCAAAGGAAATCATGAAAAGAGTCAGAGATAACTCGACCGACACAATCTGCATGCACAAAGACATCATTTCAAAGATAAGTAAAATGAATAGTGTtaacagaaagaagaaaaccaTAGGGATTTTTGGGAAATCAGGAGAAGGAAAGAGCTTCCTATTAAGTGCAATTTTAGGAAAAGAGAATCTACTGCCGTCTGGTTGTTTTGGTGCCTGTACAGCTGTTATTACTCAGGTGGAAGCCAATATGACcgactccaactacacagcagaGATTGAACTAATCTCTAAAGAGGAGTGGGAGAAAGAGCTCAGTCATCTTCATacaattttatcaaataaaaatgaggaTGAGGAATTGGTTATAATTGCAAAAGAAAAGATCACTGCGCTGTATGGAGAAGATGCCTTCAAGAAAACATTAGAGGAGCTCAAGAATGACGACAAATATGCTGAaattaaaactcaaaaaatcTCAAAACGTGATGTCTCTGAATTTGCAGATGAGGTTGCACGTTTCATACAAAACAGTGCAGTACAAACTGGCGGCTGGTTCTGGCCGCTGGTGAAGAGCGTGACCATCAAGATACCAGACCGTCGTGAACTCCTGGAGCACATTGTGCTCGTTGATATTCCTGGGACTGGAGACTGCAACAAGACTAGAGATGACCTGTGGAAATCTAAACTGAGAGAGTGCTCTTCAGTGTGGATTGTAAGTAATATTAATCGAGCAATCACTGACAGAAACCCCTTGGGGTTACTAAAGCACTGCATTGAAGAACTGGGACCAGGAGGAGAatgtaaaaacatcaaatttatCTGTACAAAAACTGATGACATAGATCCAACTGACTTTAAAAGAGATCCACGGGTTACAGGACTTCAAGACAAGAAACAGATAAAAATGTGCATCCATCTAAGAAACGAATGTGCCAAGAAAAGTGTGaaagaaaaatttgaaaattcTGAAATCAAGaaaaGTTTCAGCACTGACAATGATTTTCTTCAAGTATTTACTGTAAGTTCTAAAGCATTCTTCGACGCCAGTTTAAATCTGGAATCTGCTGAAACAGAAATCCCAAAGCTGCAGGATGATCTGAGGAGTCTTAACAAGAGCATTAACAGAGAACTGGCCAGAGATTATGTCAACGAAGCAAAGGGAGTTTTGTCTCTGATCCAAAGTGTCCAGCTGGATAAAGACAAGAAAGCGGCTGAAATGAAAGACAGCATCATCAAGGAACTTCGAAATAATCTAGAACAGGAACTGAGTAATCTTGACAGGTATTTTGTCTGCGTTTATAAAGTTTTGGATCAGCGTCTATCACAGGGAGTGAAAGAATCAGAGACGCTATGTGTTGAATCCACAAAGACATTAATAACACCGATAGCCTATAACAGCCTTGAAGCTTTGTGCAGAAAGGGTGGATGCCACTGTCCAAAAAACAAGGATATAATTCTAGACCTGAACAAAACATTGGCCAAACCCCTGCATCAGTTCATTGATGATGATTTCCGTCAGATTTTTTCTGTGTCTGGAATAACAGAGAAGTCAGTGTATGAGCAGCTTGGTGCATTCACTATTATCCATAGTCACACGGCTTACCCCAGATCTCCCATATGGCCTTACATTCATTACTTCATCAAATCGGAGGAAACCAAACTAATCGCTGAGCTCAAAAGAGAAATTGTTGACAAGAAGAAGGAAGTCTTCTCATCAATCCAAAAAACCATTGAGAACGAAATGTCTTTTTGCTACAAACAAGCTGCAGCTATGAAAGGACCAGGAAGCTTGAAGAGAATGAAAGCTCTGTTACTAAACACGGTCGACGACATGAAAAAAGACATGTTTGACAAAGCAAAAACGGAAATGCTTAAAAAGTGTGATGAATTAAAGCTCCACATAAAGGCTCGTCTTGACATAGGACTAAAGAGAGCAATGGATCTCTCACTGTCACAAAGCAGCACAAGCAAGTCGATGGATGTCTCCAGAGAAATCGAAGAGCTGGATGGACTTCTAGAGCAACTGTCCGACTGAAGCCCATTTCCATCAGATTCTATGATTTTACAACAAATCATTCGATTCTTTcaaatctttacttttttttaattcaaagttaCTACTATGCTGTTATGTTTCTGATTATACGTTTGTTTGCTAATAGaagtgttcatttgtttgtttgttttatcaaaataaaaaggctTACCCAAAGTGTATATTGATTAATTGTTGGTTTTTatctttaacttttaaaaaaatatagcaaGAACAATTAATTTGAAATTCATTAATTGGCAATTCATTAGACTGGAAAGTAATTGCAAAAATTCTTTTGAAATACATgaaataagaagaaaataagaaatactattttttattaataatgacagcaaattaaatgtttagctTCCTtcacataaagtgcaaaaaaagatatattgtactgtactgtatgaaaaatgtgttttttatactgtaagtTGGGTGGGTGAAAAGAAATATCACCCATCTATGGCATCCTCAAATGGTTAttgaataaacttttttaatcaTCA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217070.1 True 5822 mRNA 0.38 37 18190993 18220415

Neighbor

gene id symbol gene type direction distance location
efna3a efna3,efna3a,LOC107750808,LOC107739487,LOC107693331,LOC108272373,LOC108437928 coding downstream 89402 18031309 ~ 18101591 (-)
efna1a efna1a,LOC107678802,LOC107693333,LOC107739488,LOC107750807,LOC107589415,LOC103043830,LOC108437910 coding downstream 208538 17969484 ~ 17982455 (-)
snx27a snx27a,LOC107750804,LOC107599501,LOC107678803,LOC103472691 coding downstream 261797 17916500 ~ 17929196 (-)
crabp2b crabp2b,LOC107724072,LOC107589501,LOC107656471,LOC107599588,LOC107739613 coding downstream 396033 17792359 ~ 17794960 (-)
scamp3 scamp3,LOC107724082,LOC107693344,LOC107656474,LOC107599508,LOC107739575 coding downstream 402894 17780819 ~ 17788099 (-)
hax1 LOC107729882,LOC107693320,LOC107589419,LOC107599494,LOC107670002,LOC107753511 coding upstream 21113 18241528 ~ 18244835 (-)
ubap2l ubap2l,LOC107589420,LOC107669979,LOC107599491 coding upstream 25074 18245489 ~ 18267248 (-)
tuft1b LOC107693318,LOC107729883,LOC107589508,LOC107732690 coding upstream 48756 18269171 ~ 18281116 (-)
cgnb LOC107729898,LOC107693317,LOC107589422,LOC107670001,LOC107716597 coding upstream 83323 18303738 ~ 18321719 (-)
pygo2 LOC107716595,LOC107589423,LOC107729895,LOC107670005,LOC107693316 coding upstream 102396 18322811 ~ 18328270 (-)
G134319 NA non-coding downstream 172731 18017969 ~ 18018262 (-)
G134317 NA non-coding downstream 224454 17965575 ~ 17966539 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding downstream 243159 17938947 ~ 17947834 (-)
G134298 NA non-coding downstream 319037 17869131 ~ 17871956 (-)
G134299 celf3a,LOC107693341,LOC107739496,LOC107589410,LOC107750801 non-coding downstream 333807 17852172 ~ 17857186 (-)
G134334 NA non-coding upstream 47890 18268305 ~ 18269060 (-)
G134332 NA non-coding upstream 69642 18290057 ~ 18303657 (-)
G134365 LOC107726654 non-coding upstream 196611 18417026 ~ 18417853 (-)
G134411 oxr1b non-coding upstream 236750 18457165 ~ 18460899 (-)
LOC122324145 NA non-coding upstream 302785 18523200 ~ 18532017 (-)
si:dkey-266f7.5 NA other downstream 2964 18169523 ~ 18188029 (-)
G134318 NA other downstream 179594 18010882 ~ 18011399 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other downstream 255557 17929689 ~ 17935436 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 574716 17613446 ~ 17616277 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other downstream 856759 17330697 ~ 17334234 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other upstream 5194 18225609 ~ 18241613 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 466934 18687349 ~ 18691249 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other upstream 656199 18876614 ~ 18933228 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other upstream 1322367 19542782 ~ 19652807 (-)
LOC122324012 NA other upstream 1450372 19670787 ~ 19688386 (-)

Expression


Co-expression Network