si:rp71-45k5.2 (LOC107724323,LOC107670287,LOC107574714)


Basic Information

Item Value
gene id si:rp71-45k5.2
gene name LOC107724323,LOC107670287,LOC107574714
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 10410077 ~ 10411619 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217127.1
GATCATTTGATCACGGGTGACAGGGAATGACACGGAGTTTTAAAGTTTAAGGCcTCTTGCTAATAGAACGCAACACCTTCGGACCATTGAGAGCTACAGCGTGGATATAAACGGGGTCTGGGTCTGGATCTGGGTCTCCAGTCTGAGTTTGGACCGAAGAGCTCATCATGACTAACGGAGTGAACGGAGGACTCGGCGGGCTGCTGCTGGACTCAAGCGGCGCCTCACGAAGGAGGTACAAAAGATACACCACGGGAACTTACATCGGACTTATTGCGTACGCGATTCAAGATTCACCGGACAAGATGCTCACGTTCAAACAGATAATGAAAAAGCTGGAGCCGTTTGTCTTCGGAGACAAAAAGGGCATCGAGAACAACATCAGAGTCTGCCTTTCGTCAAACAGGTGTTTTGCAAAAGTGCCGGTGGATCCGGATTACCCAAACCCTAAAAAGAACTTCTGGAAAGTGGATGAAAATGGCATCACTCCAAAAATGTTTCGCAGGCATTTTAAGTATCTAATCAACACATTCCCCGGCCTGTCGGTGGATCAGACGCCACCGGCGGATGGGTGCGAGGAGAGCTCGTATCCCCCCGAGCCTCTCACGCCAGCCCGCGAGGTCACCGAAAACAAAAGCGAAGGCAAGTTCACGGGCCCCTTTTCCATAGACTCGCTGCTGAAGAGCGACCGCGAGGTGAAGCGCGCGCCCCGCACGCGCTCGGAGGAGCACGCGCGCTACGTTGACGCGCTGCGCGCGGCGACCAAAAGGAAACCCGTTTATGAATACGAAGCAGTGGAGCGCTATTACCCCGTTTCGGTAGGACGTGAGCTGGCCTCGGCGAAAAGACCTCGCCTGTCTTCAGGGCTTCAGTTCGGACAGTCTCTGCCCGCGCACATCACATATAACCACGTTCTCCTCGGCTCTCCTTTAATGTGTGACGCTAGATACATCTGCTGGTGAGCAGCCAGACTGACCACAAGTAAAGCTGAAGAAATTGCACTTaacttctgttttgttttttgttttgcttttttaataaaacggATCTTTTTCACA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0003146 heart jogging biological_process
GO:0010159 specification of animal organ position biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035054 embryonic heart tube anterior/posterior pattern specification biological_process
GO:0001568 blood vessel development biological_process
GO:0048318 axial mesoderm development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0001947 heart looping biological_process
GO:0021508 floor plate formation biological_process
GO:0032444 activin responsive factor complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217127.1 True 1058 mRNA 0.52 4 10410077 10411619

Neighbor

gene id symbol gene type direction distance location
ndrg1a ndrg1a,LOC107710403,LOC107670279,LOC107724345,LOC107653857,LOC107556406 coding downstream 7864 10392724 ~ 10402213 (-)
sla1a LOC107724327,LOC107556331,LOC107670275,LOC107653820,LOC107556370,LOC107710725 coding downstream 31239 10374711 ~ 10378838 (-)
c19h18orf21 LOC107670294,LOC107724369,LOC107653848,LOC107710313,LOC107556336 coding downstream 384426 10012408 ~ 10025651 (-)
rp9 rp9,LOC107556335,LOC107670274,LOC107724340,LOC107653847,LOC107710715,LOC107556368 coding downstream 398318 10007041 ~ 10011759 (-)
otud6b otud6b,LOC107556329,LOC107724319,LOC107702071,LOC107653818,LOC107556366 coding downstream 495018 9912365 ~ 9915059 (-)
psma2b si:rp71-45k5.4,psma2,LOC107724313,LOC103023870,LOC108425697,LOC108440756,LOC107686300,LOC107592434 coding upstream 2062 10413681 ~ 10416026 (-)
bmp8a LOC107724317,LOC107564489,LOC107556408,LOC107710496,LOC107670293,LOC107653863 coding upstream 7409 10419028 ~ 10426439 (-)
macf1a macf1a,macf1,LOC106570016,LOC107670270,LOC107653864,LOC107724266,LOC107564497 coding upstream 16296 10427915 ~ 10578168 (-)
ndufs5 NA coding upstream 168732 10580351 ~ 10582136 (-)
rnf19b rnf19b,LOC107710473,LOC107724316,LOC107670272 coding upstream 171126 10582745 ~ 10599713 (-)
G132128 NA non-coding downstream 154839 10198573 ~ 10255238 (-)
LOC122323594 NA non-coding downstream 464363 9942136 ~ 9945714 (-)
G131944 runx1t1,LOC107702085,LOC107556395 non-coding downstream 519554 9877452 ~ 9890523 (-)
LOC122323520 NA non-coding downstream 635614 9773311 ~ 9774463 (-)
G131910 NA non-coding downstream 762053 9647549 ~ 9648024 (-)
LOC122323417 NA non-coding upstream 368845 10780464 ~ 10783613 (-)
LOC122323785 NA non-coding upstream 759407 11171026 ~ 11175620 (-)
G132231 NA non-coding upstream 1073184 11484803 ~ 11487989 (-)
G132241 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 non-coding upstream 1097098 11508717 ~ 11565630 (-)
LOC122323791 NA non-coding upstream 1101512 11513131 ~ 11515458 (-)
ctnnal1 NA other downstream 47550 10315621 ~ 10362527 (-)
elp2 elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355 other downstream 98141 10291272 ~ 10311936 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other downstream 425772 9929866 ~ 9984305 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other downstream 745618 9659356 ~ 9664459 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other downstream 1100725 9308720 ~ 9309352 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other upstream 328755 10740374 ~ 10745129 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 758651 11170270 ~ 11170913 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other upstream 1298304 11709923 ~ 11756438 (-)
G132292 NA other upstream 1420554 11832173 ~ 11832907 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other upstream 2024160 12435779 ~ 12438085 (-)

Expression


Co-expression Network