ngly1 (ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448)


Basic Information

Item Value
gene id ngly1
gene name ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16114281 ~ 16119179 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217134.1
CGGACACCTGTGAATTAGCAACTATGAATGCCAGTAGGTTACGTGTTTTGCGGATGTAATTTGCCGTAGAAGTTAAATGCATAATCATGTCTGGGTCTCAAGGAGTCATTGCTTTGTGTGAAAATACCACAGAAGTGTTTCTGGATGTTTCTAAATTGCTCATTACATACGCGGACAATATCCTTAGaaacccAAATGAGGATAAATACAGATCAATCAGAATTGGAAATCCAACATTTTCAACCAAGCTCCTACCAGTCAAAGGAGCCATTGAATGTCTCTTTGAGATGGGATTTGAGGAGGCTGAAACCCACCTAGTGTTTCCTAAATCTGCATCTGTGGAGAGGCTGAGGCAGGTGCGGGAGTCAATTGCTGCTGAAAGGGACCAGAGACTTGGTACGAGTAAAGCCGCGTCCAACCAACAAAGTCATCCTCCACCACCAGCAGGGCCCTCTGCTTCTTCTTCCTCGGCCATCTCCACACCTGCACCTGCACCACCACCAGCTGCTCTGCCATTCActTTGAGCAGTGGGACATTTCAGAAGACTGTGCAGTCAAACTTCCAGCATGTGTTGATATACGAGAGCCCCGAGTTGCAGCAGAAGGCCCTGAGCTGCATACCTCATGAACTGCTCCGATCCAGAGCTAAAGAACGCTTGAAACAAGCCAAGGACGTGGAACCAGCTTGTAATCTAGATGAGGAGGACATGTTAGTTTTAGAGCTGTTGCAGTGGTTCAAAGGAGACTTCTTTACTTGGGTGGACAATCTGCCATGTAGCCGATGTGGAGGTCCGACCCAGCCTTCTGGACCCCTCTCCCCCTCAGATGATGACCTACGCTGGAATGCAGGCCGCGTGGAGAACCACTTCTGTCACACCTGCCAGCTCTCCACTAGATTCCCAAGGTACAATAACCCAGAGAAGCTTCTGGAGACCAGAAGAGGGCGTTGTGGGGAATGGGCCAACTGTTTCACTCTGCTCTGCCGAGCTTTATGCCTTGAGGCCAGATACATCTGGGATAGCACGGATCACGTGTGGACGGAGGTGTATTCTCAGTCGCAGTGTCGCTGGCTGCACTGTGACCCTTGTGAAAACGCGTGCGATAAACCCCTCCTGTATGAAATCGGCTGGGGGAAGAAACTCTCCTACATCCTGGCGTTCTCTAAGGACCAGGTTGTGGATGTGACATGGAGGTACTCCTGTAAACACCCAGAGGTCCTTTCCAGACGCACACACATTCAGGAGACGAGGCTGCTGCAGACGCTTAACGGCCTCAACGCTACGAGGCAGCAGGCTCTAGGAGCAGAGAGGAAGCAGCAGCTGTTGCAAAGACTGCTGGTGGAGCTGGTCGAGTTCATTTCTCCAAAGACTCCTACATCTGGAGAGCTGGGGGGTCGCATCTCAGGATCTCTGGCTTGGAGGGTGGCCCGAGGGGAGTCTGGGGCAAGTGACACTAAAGGGGAAGAACAGGAATGCGTCTTTATTCCGTCAGAATCTGAAAAGCAAAAGAAGTTGTTCCATATTTCTTATAATGTGACCAAAAACTGTTACTTCAGAGTGAGCAATGGCCAAGAGACTATCCCAGGATGGCAGAGAGGTGCTTGGAGGACAGAAAATATGTTCAGGAAAGAAGAGAATGACTGGCATATGGTGTATTTGGCACGAACGGAGGGTTCTTCCTTCGGTAGGATAAGCTGGAAAATGAACTTCGCTCCAGTAGGGATGAAGATAAAGTCCACTTCGGTCCGAGCCTTCAGCCAGACCTTCCATTCAGGCAGCGTGCGTTGGAGTTTACGCTCCGCCGAGACCACCATAGAGTTCCCCGGAGATGGTGAACTGCACTCCTCTTCAAGTCTGTCCGGAGGCAAAGAGCTGATTGTGGAGGCGGAGCTCTCAGGAGGAGAGGGTGAAGTGTCATGGCAACACGCTCAGCTCTTCAGACAGAGTATAAAAGACACAGagaaagttttatttgaaatcttgGTTGAAATGGAAGAGTCTTGATAAGAGATTAGCATGTTTACGTCTCTTGCAAGTACACATGTGAAACGCTGAGGAAATGTTTCAGCAAAAGTAAGTTTTTACTTTCCTTTTAGACGCAACCCTGCAATCAACGGTGTTGTTTTAAAGCCCGGCATCAAGTCTCATCTGCATGTCTTTTTACTGTATGCTATTTTTATCTGgctgttgtttcttttcttttttttgccagaaatacattttactgtaaattactCTGGCTAGCCGGCTGGAAAATTGAACTATTTTATTGTAACGTCTAAGTAATGTGATTTTTAGATATAACCAAAGTTGGACATGTAAAATCTGTCATTTCGTTGAGTTTAAAACtgactttgcattttttttttttttctgttcataaGTGTAATGATATGTCCTTTTAAccatacattaaattatttaattcttcA

Function

symbol description
ngly1 Predicted to enable peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity. Predicted to be involved in glycoprotein catabolic process; protein deglycosylation; and protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in NGLY1-deficiency. Orthologous to human NGLY1 (N-glycanase 1).

NR:

description
peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase

GO:

id name namespace
GO:0006516 glycoprotein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity molecular_function

KEGG:

id description
K01456 E3.5.1.52, NGLY1, PNG1; peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217134.1 True 2431 mRNA 0.47 11 16114281 16119179

Neighbor

gene id symbol gene type direction distance location
satb1a satb1a,LOC107739638,LOC107593608,LOC107688330,LOC107748681,LOC107656649,LOC107592069 coding downstream 72317 16035473 ~ 16041964 (-)
tbc1d5 tbc1d5,LOC107748680,LOC107656654,LOC107688331,LOC107739565 coding downstream 80769 16011844 ~ 16033512 (-)
dazl LOC107656655,LOC107592019,LOC107593610,LOC107739568,LOC107688400,LOC107748682 coding downstream 102968 16006305 ~ 16011313 (-)
rftn1a rftn1a,LOC107592099,LOC107656650,LOC107688402,LOC107748728,LOC107739606,LOC107593619 coding downstream 108596 15989579 ~ 16005685 (-)
gpnmb gpnmb,LOC107656657,LOC107688332,LOC107739567,LOC107748677 coding downstream 131170 15976332 ~ 15983111 (-)
znf516 znf516,LOC107696949,LOC107592028,LOC107688320,LOC107563696 coding upstream 337434 16456613 ~ 16492726 (-)
si:ch73-196l6.5 si:ch73-196l6.5,LOC107748759,LOC107697203,LOC107592102,LOC107563699,LOC107656579 coding upstream 531550 16650729 ~ 16654802 (-)
slc52a2 slc52a2,LOC107656640,LOC107739551,LOC107748697,LOC107592033,LOC107697026,LOC107563698,LOC107748696,LOC107697021,LOC107656639 coding upstream 536033 16655212 ~ 16663534 (-)
eppk1 eppk1,LOC107656638,LOC107748699,LOC107697067,LOC107739550,LOC107592034 coding upstream 548783 16667962 ~ 16681330 (-)
pleca LOC107748698,LOC107697034 coding upstream 566946 16686125 ~ 16772130 (-)
G133564 NA non-coding downstream 12299 16005112 ~ 16101982 (-)
G133570 NA non-coding downstream 89543 16017527 ~ 16024738 (-)
G133558 NA non-coding downstream 117415 15987939 ~ 15996866 (-)
G133554 NA non-coding downstream 164819 15948986 ~ 15949462 (-)
G133499 NA non-coding downstream 175470 15937440 ~ 15938811 (-)
G133587 NA non-coding upstream 5131 16124310 ~ 16126708 (-)
LOC122323712 NA non-coding upstream 202531 16321710 ~ 16332901 (-)
LOC122323515 NA non-coding upstream 426819 16545998 ~ 16548826 (-)
G133771 NA non-coding upstream 431208 16550387 ~ 16551085 (-)
G133772 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding upstream 438262 16557441 ~ 16558450 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other downstream 189996 15922223 ~ 15924285 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other downstream 373952 15736947 ~ 15740329 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other downstream 453561 15659919 ~ 15660720 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other downstream 465702 15644862 ~ 15648579 (-)
G133217 NA other downstream 744545 15366434 ~ 15369736 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other upstream 161778 16280957 ~ 16508595 (-)
G133834 pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710 other upstream 737800 16856979 ~ 16869564 (-)
LOC122323321 NA other upstream 763808 16882987 ~ 16883480 (-)
G133842 NA other upstream 767281 16886460 ~ 16887000 (-)
LOC122324114 NA other upstream 770650 16889829 ~ 16890874 (-)

Expression


Co-expression Network