LOC122323367 (si:ch211-171h4.6,LOC107724079,LOC107656587,LOC107739584,LOC107693286,LOC107599572)


Basic Information

Item Value
gene id LOC122323367
gene name si:ch211-171h4.6,LOC107724079,LOC107656587,LOC107739584,LOC107693286,LOC107599572
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17223716 ~ 17227493 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217163.1
TGATCACATGACAAAAATGGGAGAAAAGGGttcagagagaaggagaagagcTGGAAATGATGTCAACGAACCCGTCACTTATTTATTTGCCTGCACACTGAACATGACCTGACACTCATACTCGGTCTCTGCTGGACACGTTCACAAATTACTATGCAGTGGTGTTTCCCCAAACCCTGATTGTGACAAGACTTTCACTAAGaATGGCCTCCAATGCAACACTTCTCATGCAGCCCCACTCAGACAGCTCAACCCATCTTCAGAAAATGTCAGTGGACATTGATGCCATTATGGATAATGTTACAATAGTCCTCTACACCATTACCATAATCTTCGGCATCACCGGGAACTCTTTGGTCATCTGGGTAGCTGGCATGCGTCTGAAGCCCAGCGTGACTAACGTATGGCTGATCAATCTCGCCGTAGCGGACCTGATCTTCTGTCTTACCCGTATAACTTCGCTCCTCAAAAAGCTTTTCTTCGACCACTGGCCTTTTGGACTCTTTCTCTGCAAGTTCAATGGTTTCTTCAAATACGCCAACATGTTCtgcagtgtttttcttctgGCCGTGATCAGCGTGGATCGAGCGCTCTGCGTCTGGCGTCCAGTGTTAACCAGAGAGCGACGGACGTTATGTGCTGCTCGTGTGGTCAGCGTGGGAGTTTGGATCGTGGCGGTGATCTTTAGTTCACCGTACTTTGTGTACAGACAGGTCTACCTTGGCGACAACAACCTGAGCAAGTGCTCACTGGAGGTGAAAGAAGCTTCGAAGGGTGACAATTCAGCAAAGAACGCCTTGTACAGCATCCGCTTCTTATGTGGATTCCTCTTGCCCTTCCTGGTCATCCTGTGCTGCTATATTACAGCTGGCATTGGGATACGCAGAACAAGGTTTTCTGGAAAATCGAGGCCTCTCCGGATTCTCGCCGGACTGGTCTGTGCTTTTTTCTTATGTTGGGGTCCCTACCACTGCCTACTGCTTGCCAAGATGGTGGACAAGAAGAGCCATGCTGTTAAAGTGGGCCTACCTATCGCTAAAGGCTTTGCGTATTTCAACAGCTGCGTAAACCCAGTGCTGTACTTCTGCATGGGACTGGATGTTAGGCAACGCTTCAGACAAAGCCTATCAGGGATTTATCGCAGAGCACTTATGGAAGAAGGCCAGACTTTGCAGTCCCAGGAAGGCACTGCAGAAGAAAGCTGTAATTCCATTCCAAAGACTGCAGGGATCATTCGAGACAGACCCGAGGGCATgactaaagtttaaaaagagtttcattgtaatgtcatttttgctttttaacagGACCAGTCATTGGGAAAATATAAAGAGGAAGCCGATATATGTAAACACTGATCAAGTCCAAATGTGAAAAATCACTCTTTTTTTGCTGACAGTTATACTATCAGACTGTCTTTAAAATAAGACGGTTAAGAACTTTTACTGACAAAACCTAAAAGAGAGAACATCCAGTAATAGCAAAattaacatgtatatatttgtatttttaacacTTTGCTAAATTTTGTACATAAAAAACAACGGAAACATTGGTTTTCAATCGTCAAGGGAAACTATGGCCTGTTTCTGTGCcctttaaaatcaaaaccaCTGTTTAGCAGCTGCTATATTTCCTTGATCCAAAGCCAATAAACTGTGGTTAGGTTTCTGCTATGGTTTCTGGCTTTGCTGAACAGCATATTAACTTAAGTCAGCTTGAGCTGTTATTGCTGATAATTCCCTTTCTGATGAAATGTGCATCTTAAGGCATACTGTGCAAAGCTTGAACTACATTTGAATCTACAATTTGAATttacatcaatcaatcaatcaatcatttttatttatatagcgcttttaacaacacaggttgcatcaaagcactgtacagtataatgacagggatatatagtgacgagagtgaccaatttcttattaaa

Function

NR:

description
PREDICTED: C3a anaphylatoxin chemotactic receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217163.1 True 1942 mRNA 0.43 3 17223716 17227493

Neighbor

gene id symbol gene type direction distance location
LOC122323323 LOC107656565,LOC107739585,LOC107656564,LOC107739586,LOC107589464,LOC107599573,LOC107589461 coding downstream 10912 17211462 ~ 17212804 (-)
LOC122324047 LOC107739586,LOC107656565 coding downstream 17436 17204877 ~ 17206280 (-)
usf2 usf2,LOC107739527,LOC107724110,LOC107656615,LOC107693382 coding downstream 27265 17187177 ~ 17196451 (-)
si:dkey-211g8.4 NA coding downstream 37995 17183537 ~ 17185721 (-)
si:dkey-211g8.8 NA coding downstream 39599 17178869 ~ 17184117 (-)
necap1 necap1,LOC107599542,LOC107656614,LOC107739526,LOC107589372,LOC107724115,LOC107693381 coding upstream 27552 17255045 ~ 17259133 (-)
rcvrn3 rcvrn3,LOC107724101,LOC107589377,LOC107656611,LOC107599570 coding upstream 47224 17274717 ~ 17280868 (-)
cacng6a cacng6a,LOC107693285,LOC107589389,LOC107724075,LOC107739513,LOC107599526,LOC107656581 coding upstream 257453 17484946 ~ 17492735 (-)
styk1a si:dkey-14o18.6,LOC107693362,LOC107739618,LOC107599525,LOC107724061,LOC107589393 coding upstream 298919 17526412 ~ 17534108 (-)
fam131ba fam131ba,LOC107665489,LOC107724098,LOC107693361 coding upstream 327059 17554552 ~ 17577989 (-)
LOC122323277 NA non-coding downstream 55608 17164694 ~ 17168108 (-)
G133902 NA non-coding downstream 59601 17163832 ~ 17164115 (-)
G133861 slc9a3.2,LOC107656591,LOC107739626,LOC107693290,LOC107748744,LOC107599577,LOC107565571 non-coding downstream 91721 17127666 ~ 17131995 (-)
G133887 NA non-coding downstream 166849 17056425 ~ 17056867 (-)
G133886 NA non-coding downstream 167405 17056101 ~ 17056311 (-)
G133919 sbk2,LOC107724114,LOC107693243,LOC107739621,LOC107656585,LOC107599589 non-coding upstream 21191 17248684 ~ 17251304 (-)
G133920 NA non-coding upstream 33217 17260710 ~ 17261499 (-)
G133917 LOC107693378,LOC107724100,LOC107589374 non-coding upstream 38171 17265664 ~ 17268048 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding upstream 60174 17287667 ~ 17289380 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding upstream 97838 17325331 ~ 17345216 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 4926 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 322940 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 325115 16897995 ~ 16898601 (-)
LOC122324113 NA other downstream 326573 16896108 ~ 16897143 (-)
LOC122324112 NA other downstream 331135 16891692 ~ 16892581 (-)
G133949 NA other upstream 55839 17283332 ~ 17284744 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other upstream 103204 17330697 ~ 17334234 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 385953 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 702196 17929689 ~ 17935436 (-)
G134318 NA other upstream 783389 18010882 ~ 18011399 (-)

Expression


Co-expression Network