cldn35 (LOC107591984,LOC107654683,LOC107592950,LOC107754258,LOC108430542)


Basic Information

Item Value
gene id cldn35
gene name LOC107591984,LOC107654683,LOC107592950,LOC107754258,LOC108430542
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14953377 ~ 14956945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217164.1
TTCATCTTTAATCACCTTGCAAGGTAATCTTATATTACAGTAATCTGATCATTTGTATCTTTGTAAAATATCCCTTTACAATTTGACAGCCGTGTAAATTCACACTTGCCTAAATGTTGTTACTCTGAGCATTTTTGAGAGGATGTATATTACTGATGTTCTCCATCACAAAAAATGGACTGGCATGCTGTTTCAAAGTGTGAAGATTTAGGTGTTAGTCATCAGTCGCCCTCAGAAATGCCTACAACAGCAAACACCCTCACAAGCCCactattttaaagcaatttcttttgtctttattaGGGGAATTGCAAACAATCTCTTGTATCAGCTCTTGAAAAGCACTAAATGCTTTTGAGGCTTATTGTTGACGGCCACTAGATTGTCTTTGTGTTAATTGATCCGCTAGCAGACACCACTCTTGCCCTCCCTCCTCTGAGTCGCTCCATCTCCCTTTATAATCCTGCCATCCGCTGTTTTCCTTTCAGGATGAGAGTGGCTTTGCTCAACAGTGTTTCTAAAGATGGACGAGACTAGCACACTTGAAACACCTGTAAGGGGTATTGGGCGGCCCAATAAGCGATCGGCATTCTGACGGAAACCAACCAACCCGTGAAGGTTTTGTTGCGGTGAACATTGCTTTTGTCTTTGCCTAAGTGGCCTGAAGCACAGcagtctttttttgtgtgtttgtctgctcTCGATACGGCACGAGCATCTAATCTACAGAGCTTGAAAGAGGACAGCGTATTTACTTTTGGCATCTCTCGGCACAGTTGtcacatctgaagaacctttctttTTACTTCACACGAAACTGTGTAATAATTTACGAAGGCCTTTGCCATCGTTCAGACTCTAGTCTAGGTTCTGTTTGACGTTTGTTGGGTGCTTGGAAGTAATGCATCTTTGACAGCCACTGCATCCACGTCACAGTATCAAATTCAATCGGTGTGACCTGTTTGGGTAAGGCAACACCGGACTGGGTAGCAACAGAGACACATGTCCCTGTGATAAGAGTAGATCTTTCTTTACCGAGAAGACAACAAGTCCACCACACTTTGCAGTGGTGCGAGACCAACTTCTACCGTCTGGACGTAGCCTGTGATGGTGGGTTTCTCACTGAAGTTCAGTCAGCCTCATGTGGGTGAGTTGAGACGAGTGGCAGCAGTTCAATTATTCATCTCTTCAAAGGAAGACCAGGCGAAAGTGAACACAGCTGTCTGAGAAACCAAAAGACGGACTAGAACGTGGCTAAACAAAACTTGCTTCCAAGAATTTCGAAAGACAAATCTGAAGCGGTCTGGTAAGGCTCTTTTTAAGGAGGACTGACCGAGACTTCTTGCGGAGGATTGGGACCAAATAAAGCACTAGAATGTGCCTGAACTTTGCTCtgtgaatttaaaaacactacGTGAGGTCCAGCAAGGAACTTTAACGGTGGACACAAGGACTGACAAACGAAACGAGACAAGAAGACGGACTAAAATGAATCTGAACAAAACTTTGCTTCAAGAAATTTGAAAGACAAAACCCTAGCAAGTAACTCGGATTGAAAAGAGACTTCTTTCTGAGGATTGGCAAACTTGCCGACCTCTTTGGGCAAGGAGGGCTGAAACTATTATCTATAGTCGGAGCTCCTGCAAGCGGAAAAGTGTCGTCGAGGTTGTGGCCCGAGGAGGCGTGGTACTCAGAGGGTGGCGAGATGGTGAACACAGGTATGCAGTTGATCAGCTTCACCTGTGCTGTGACAGGATGGGTGATGGCTATAGCAGTGACTGCACTGCCCCAGTGGAAGGTCACGGCCTTCATAGGCAGCAACATCTTGACCTCTGAAATCGTTTGGCAGGGGATTTGGATGAACTGCATCTACCAGACCACCGGCCACATGCAGTGTAAGACCTACGACTCCATGCTGGCTCTACCGCCTGACATCCAGGCGGCACGGGCGCTGATGTGCATTGCTATCTTCTTGGGCTGGTTGTCCTGCACCGTCTCTTGCTGTGGAATGAAGTGCACCACCTGTGCCGGGGACGATCGCCATGCCAAGGCTGGCATAGCGCTGTCCGGTGGGGTGCTCTTCATCCTGACGGGCCTGTGCGTCCTAGTGCCAGTTTCCTGGACAGCAAACACTGTGGTGCAGGACTTCTACAACCCCAATGTTCCCCTCCAGCACAAGCGGGAGCTGGGTCAGGCCATTTACCTGGGATGGGCGGCAGCTGTGATTCTTATGATCAGCGGGGCCGTGCTGAGTAGTACCTGCCCGCACATCGAGAGAGGAGGGTACAGACGTGGGTACATAGGTCGCAGTTTTGCAAACTCAAGGCCTTCTGCTCCTGATCCGCCAAAGCCAATCACCACCAGTACCCTGCCTCTAAAGGAGTATgtatgataaagaaaaaaaaatcggagCAAATGCGGGAAGGTGTGGCTAAACGAGGATAATGATTAAAGGTGCACTCAGTGATTTCTGTTTCAACGGACGGATGCATTTTGTGTCATTGTGGTGATATACATATTTGCCATTTGAAATCccatttatctgtttttttttttttctttcattgccTATACATCGGACATATCTTGGTGCTGTTCACCATATCCTCCATTTTATTGACTGTaatatacataatgtatttgttacattgttttgcttttgtttagaTATGTTTGTTTGTAAGTGTCATTTCTGCACCACTagtagcattattttattttttttcagtggaacaTTGGCACAACCAATGCTGTGAGTTTGGAGTGGAACAATTCGTTTGTTACACTGTTTGGTGACACAGGTGGAGCagaaatgacacatttcaacttttaaagtactttttgcACTGCTAGCAAAAATGGAGaaaatgagggggaaaaaaaaattggcactGAAAAACAGATTCACTCCAAACACTGTGGCACACTTCAGCATTAACTGAACTGTAAAACACAGCTGGCCATGTGATCTCCGTTTGTGTGAGCGtacattattttcaattgtcataagtattattatttcttcagGGGTAATGGTTTTAATGTGGGAAAAAATTACTGAGTGCACCTTTAATTAAAGACAGTCTAGTATCTAGAATTTGAAATCAAGTGTTTGAGTAGTAATATTTGTAGTAGTATTGCAGTGGGTCTACggttttcagaaatatttcatttccCTTGCTGCTTGTCACTCTATTAGTGTATTTTCTCATATGAAggcatttaaattagtttagaCCTTATTTTGATACGATTTTAGTCCAATAGTAGTGACCGTGGGCTAAATGATACCTTGGGCCCACTTTGCAgtgtcttttttcctttttacttaTATATGGTAATCTGAAAGACGGCACACCAACAGTACACCCACTTTCAGTATGTTAGATTGCTGTGTtcactgtgttttctctgtattTATCTATTAAAATTGTGTGAACTTGAACcacttgattaaaaataaaaatgtgtgatgtGACAATGGTGCAATTGTTCTAtcaaaataaacaggaaaaaaaacgaattaaataaccacatttattaaaatagagcACTGCTCTTACAATGAT

Function

NR:

description
PREDICTED: claudin-4-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217164.1 True 3569 mRNA 0.43 1 14953377 14956945

Neighbor

gene id symbol gene type direction distance location
ago4 LOC106511154,LOC107591980 coding upstream 1705 14935159 ~ 14951672 (+)
tfap2e tfap2e,LOC107654734,LOC107688421,LOC107706245,LOC107754262 coding upstream 46670 14897549 ~ 14906707 (+)
ncdn ncdn,LOC107706243,LOC107654732,LOC107754263,LOC107688377,LOC107592947,LOC107585609 coding upstream 56933 14892389 ~ 14896444 (+)
ext1c ext1c,ext1,LOC107706241,LOC107654729,LOC107592945,LOC107688378,LOC107754264 coding upstream 66613 14838627 ~ 14886764 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 coding upstream 457904 14473289 ~ 14495473 (+)
cdca8 cdca8,LOC107591982,LOC107592949,LOC107654740,LOC107754257,LOC107688370 coding downstream 1662 14958607 ~ 14961570 (+)
LOC122323313 ext1c,LOC107706241,LOC107654729,LOC107592050,LOC107754264,LOC107592945,LOC107688378 coding downstream 254222 15211167 ~ 15226683 (+)
LOC122323516 LOC107706254,LOC107654743,LOC107710329,LOC107688368,LOC107602377 coding downstream 275118 15232063 ~ 15276474 (+)
LOC122324124 LOC107706255,LOC107654747,LOC107591987,LOC107688367,LOC107710332 coding downstream 356912 15313857 ~ 15319770 (+)
crybg2 LOC107654746,LOC107706257,LOC107592054 coding downstream 370722 15327667 ~ 15350247 (+)
G133068 NA non-coding upstream 195401 14757624 ~ 14757976 (+)
G132916 NA non-coding upstream 370961 14175839 ~ 14582416 (+)
G132913 trps1,LOC107706219,LOC107592043,LOC107754280,LOC107696539,LOC107562946 non-coding upstream 784893 14168095 ~ 14168484 (+)
G132910 NA non-coding upstream 847116 14097276 ~ 14106261 (+)
G132884 NA non-coding upstream 1105262 13846782 ~ 13848115 (+)
LOC122324050 NA non-coding downstream 65330 15022275 ~ 15035422 (+)
G133109 ppce,LOC107602379,LOC107688393,LOC107706142,LOC107592053,LOC107654745,LOC107710331 non-coding downstream 239112 15196057 ~ 15281004 (+)
G133129 NA non-coding downstream 417555 15374500 ~ 15378019 (+)
G133253 NA non-coding downstream 503393 15460338 ~ 15460706 (+)
G133256 NA non-coding downstream 525053 15481998 ~ 15483517 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other upstream 115408 14834601 ~ 14837969 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 1616628 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 1927351 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 2528299 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 2840480 12111279 ~ 12112897 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 121509 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 351782 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 398663 15355608 ~ 15361845 (+)
cckb cck,LOC107592091,LOC107654691,LOC107706167,LOC107688363 other downstream 464190 15421135 ~ 15424497 (+)
G133266 LOC107748647,LOC107591995 other downstream 612719 15569664 ~ 15577981 (+)

Expression


Co-expression Network