LOC122323385 (sdhaf3,LOC107702681)


Basic Information

Item Value
gene id LOC122323385
gene name sdhaf3,LOC107702681
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5876050 ~ 5882974 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217189.1
TTATGATATGTCACCTCTCGTGAGCTTCGGCTTTGAGCTTTCAGCACGCTTTTCCAGTCAGACTCGGCGTGAAGTTATGGCTCACGTGTCGGCGGTGCGGGCTCTGTATAAGAGGATCCTGCTGCTGCACCGCTTCATGCCCGTGGACCTGCGGGCTCTGGGGGATCAGTACGTGAAGGACGAGTTCAGAAGACACAAGACCGCCACAGACGAAGAGGCGACGCGCTTCTTGACGGAGTGGCAGAACTACAAAGACACTCTACAGACGCAAGTGCTGGAAGCGGTGGGAAACAAGAAATTGGAGTTTGGCTCTGATTTATCGGAAGAGAAACTCAAAGACTTTCAAGATGAACAGATCGGACAGCTTTATGAGCTTATGCTTGAGTCCACAAAACCAAACCGACAGTTTGATATTCAAGAAGAGGGAACGCCAAAGTAACACACCCTCTGAAGGGAAAAAGGACTCTTTATCTC
>XM_043217190.1
ACCTTTATGATATGTCACCTCTCGTGAGCTTCGGCTTTGAGCTTTCAGCACGCTTTTCCAGTCAGACTCGGCGTGAAGTTATGGCTCACGTGTCGGCGGTGCGGGCTCTGTATAAGAGGATCCTGCTGCTGCACCGCTTCATGCCCGTGGACCTGCGGGCTCTGGGGGATCAGTACGTGAAGGACGAGTTCAGAAGACACAAGACCGCCACAGACGAAGAGGCGACGCGCTTCTTGACGGAGTGGCAGGTAAACAGAGACTCGCCCGCTCCTGTCAGACCGTCCCTTGACCGCAGGCCTCGGCCTCTACACCAGCGACAGAGACACATAAAGAGCTGTGTCCTCCTGAAACACAAGTTTGATCGTAAGCAGTCATGACAGACGTGACGGACAAGTTTCAATTAAGATGTCAGA

Function

symbol description
sdhaf3 Predicted to be involved in mitochondrial respiratory chain complex II assembly and succinate metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrial intermembrane space. Orthologous to human SDHAF3 (succinate dehydrogenase complex assembly factor 3).

NR:

description
PREDICTED: succinate dehydrogenase assembly factor 3, mitochondrial

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217189.1 True 474 mRNA 0.50 2 5876054 5882974
XM_043217190.1 False 413 mRNA 0.55 2 5876050 5881152

Neighbor

gene id symbol gene type direction distance location
col28a1a col28a1,LOC107754784 coding upstream 136865 5725368 ~ 5739185 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding upstream 158369 5716696 ~ 5717681 (+)
LOC122323266 NA coding upstream 261920 5613068 ~ 5614130 (+)
LOC122323836 LOC107598234 coding upstream 304779 5569730 ~ 5571271 (+)
LOC122324215 NA coding upstream 343163 5531960 ~ 5532887 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 178575 6061549 ~ 6162543 (+)
mylipa mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572 coding downstream 351051 6234025 ~ 6252339 (+)
npr1a npr1a,npr1,LOC107694365,LOC107677481,LOC107754786,LOC107731544,LOC108435512 coding downstream 383409 6266383 ~ 6344260 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding downstream 463815 6346789 ~ 6361192 (+)
gon4la LOC107754817,LOC107694363,LOC107584344 coding downstream 482544 6365518 ~ 6377599 (+)
G130861 NA non-coding upstream 201206 5674295 ~ 5674844 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding upstream 205518 5659533 ~ 5670532 (+)
G130855 NA non-coding upstream 243622 5614264 ~ 5632428 (+)
LOC122324017 NA non-coding upstream 263712 5610988 ~ 5612338 (+)
G130835 NA non-coding upstream 288535 5565380 ~ 5587515 (+)
G130893 NA non-coding downstream 40058 5923032 ~ 5953470 (+)
G130891 asns,LOC107754811,LOC107672863,LOC107731557,LOC107702657 non-coding downstream 47878 5930852 ~ 5932842 (+)
G130940 NA non-coding downstream 284652 6167626 ~ 6169359 (+)
G130944 NA non-coding downstream 344772 6227746 ~ 6228087 (+)
LOC122324219 NA non-coding downstream 372032 6255006 ~ 6263954 (+)
LOC122323254 sdhaf3,LOC107702681 other upstream 123133 5745801 ~ 5752917 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 290395 5583505 ~ 5585655 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 561872 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 647824 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 696373 5176270 ~ 5179677 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 488861 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 580109 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 636946 6519920 ~ 6526080 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 809000 6691974 ~ 6696204 (+)
G131183 NA other downstream 950895 6833869 ~ 6836858 (+)

Expression


Co-expression Network