si:ch73-196l6.5 (si:ch73-196l6.5,LOC107748759,LOC107697203,LOC107592102,LOC107563699,LOC107656579)


Basic Information

Item Value
gene id si:ch73-196l6.5
gene name si:ch73-196l6.5,LOC107748759,LOC107697203,LOC107592102,LOC107563699,LOC107656579
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16650729 ~ 16654802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043217191.1
CTTAAGACCGTTTTTCATACAATTTAAGACGTTTAGTTTCATCTtgtgtaaaaactaaaatggtttGGGTTAATTTGGGTTAAAAGTGTGCTCCATTTACTGCAGATGTTACTGAATAACTTCATATTAGCAGATATGTCTTATCCAAAGAGAACTTCTGACAAAGGGGTCAATCTCCTGGATTAAATGTCTTGCTCAAGGACACAATGCTGAGTCTTCTTTGACACtacagctgaataaataacttTGACTGCACCAAATTTGGAGTCTGAAGATGAAGTTTGTCATTTGTACGTCATAGTGGCTCCAAGTAATAATGTCTGTCGCTGAATGAAATTCTCTTGAGTACTAACTATACTATACAAACTATTTTTTAGACATTAAGGTTACGAAGTCTGATCTGAATTAGCATGGCCACATCTGTACTCACCCATGTCTTGGCTGGCCTGTTTGGCATGGGCTCCTGGGTCACCATCTGTGGTCTGTGGGTGGAGCTGCCTCTCATCGTTCCACACGTACCTGAGGGTTGGTATCTTCCCTCTTACATCTCTGTTATTGTCCAACTGGCCAATATCGGACCTCTGTTTGTCACATTAATGCACCGCTTCCGCCCAGGAAAGCTTAACGAGACTGCCGTTATCTATTTTATTGTTGGTTTCGGGATACTGGCGAGCCTTTTCCTGGCTTTCTTCTGGAGTGAGACGGTAGTGGTGCGAGGCGTAGAGCGCAGTGTTCCTCTGCTGctcctcatcttcttcatctCATTAGTGGATTGCACCTCTTCGGTGACGTTCCTTCCCTTCATGACGCAGCTCAAGGCGGAGTATCTCATGACATATTATGTAGGAGAAGGCCTGAGTGGTCTTGTCCCAGCTTTAGTGGCGATGGTTCAAGGTGTAGGTGTGATGGAATGTGTCAATGCATCTCAAATCCTCAGATCCAATGAAACACAACTTAATGTGTCGGAAAGAGAAACTAAACTTGTGCCTCACTACCAACCGGCTAACTTTTCCGTTGAAGCCTATTTTTTCATCCTGGCGGCTATGATGGTGGTTTGTTTGGGGGCATTCTTACTTTTGAACTACCATCCAGCTGTGGCCCGAGAACGTCCcaataacataaatgtaaatgaagatCTCATATCAAGTTGGAAAAACAGGAAATCTGAACAGAAACCAATGATGCGTTCTCAAAAGTCTAGTCAGAAACCCAAGAGCATGTTTGGGACGGGGACACACACATGGATGCAAGTCATATACATCTACATTATGCTAGCATGGGTGACCGCTCTGACCAATACCGGTTTGCCATCAGTGCAATCATACTCTTGTTTACCATATGGAGACCAGGCCTATCACTGGTCAGCAACTATGGCGAATGTTGCCAATCCTATAGCTTGTTTCATCAGCATGTTTTACACTCAAAGGTCCTTAGTGTTGATGGGAGTTCTCACTTCAATTGGTTCTCTTATTGGATTTTACATTATGGGTATGGCTGTGTTGAGTCCATGTCCACTGCTAGTTAATGACACCTCTGGAGCCGTCCTTATTGTGTTGGCATGGTTCTTTTTCATCTTCATCCTGTCTTATGTAAAAGTGATTGTTGCCGTCATCTTGCGGGATGAAGGCCACAGCGCCCTTGTGTGGTGTGGAGCTGTAGTGCAGTTGGGCTCGATGTTGGGGGCGGTGACTATGTTTCCTTTGGTCAATATATATGACTTTTTCACCTCTGGTGAGCCATGTAACACATATTGTCTATGAGAAAATGTTCTGtaaattctataaaaattgattataataataattctatcaATCACGACTTGTGGAACATATGTTAAAAATCGACTGGACTTTTAGTCAGAAAGgagatttgtttaatataaaagtgaAGTGGCCAGGTGATccaaagtgcacacacacagcagtgcacacacacacccagagcTGTGGGTTAGGGTTTGGTGTCTTGCTCGAGGGTCTCACCTCAGTCATGACATTGAAGGTGAAGAGAGTGCTGATTTTTCACTCCCCCCACCTACAATCCCTGCCAGACCTGGGACTCGAACCCGTCCAGCTCTCTCTACATTAggccattaaaatatttttaaattaatgtgaaaaaagcttttttaatattgactATGGCTACTATGCAAATGTTTTACTATGTGTGTTAACAATGTTTGTTAAGTGTTTTATGCTGAtgtaaaaaaacgaaataaataaaaattgctcactta
>XM_043217192.1
CTTAAGACCGTTTTTCATACAATTTAAGACGTTTAGTTTCATCTtgtgtaaaaactaaaatggtttGGGTTAATTTGGGTTAAAAGTGTGCTCCATTTACTGCAGATGTTACTGAATAACTTCATATTAGCAGATATGTCTTATCCAAAGAGAACTTCTGACAAAGGGGTCAATCTCCTGGATTAAATGTCTTGCTCAAGGACACAATGCTGAGTCTTCTTTGACACtacagctgaataaataacttTGACTGCACCAAATTTGGAGTCTGAAGATGAAGTTTGTCATTTACATTAAGGTTACGAAGTCTGATCTGAATTAGCATGGCCACATCTGTACTCACCCATGTCTTGGCTGGCCTGTTTGGCATGGGCTCCTGGGTCACCATCTGTGGTCTGTGGGTGGAGCTGCCTCTCATCGTTCCACACGTACCTGAGGGTTGGTATCTTCCCTCTTACATCTCTGTTATTGTCCAACTGGCCAATATCGGACCTCTGTTTGTCACATTAATGCACCGCTTCCGCCCAGGAAAGCTTAACGAGACTGCCGTTATCTATTTTATTGTTGGTTTCGGGATACTGGCGAGCCTTTTCCTGGCTTTCTTCTGGAGTGAGACGGTAGTGGTGCGAGGCGTAGAGCGCAGTGTTCCTCTGCTGctcctcatcttcttcatctCATTAGTGGATTGCACCTCTTCGGTGACGTTCCTTCCCTTCATGACGCAGCTCAAGGCGGAGTATCTCATGACATATTATGTAGGAGAAGGCCTGAGTGGTCTTGTCCCAGCTTTAGTGGCGATGGTTCAAGGTGTAGGTGTGATGGAATGTGTCAATGCATCTCAAATCCTCAGATCCAATGAAACACAACTTAATGTGTCGGAAAGAGAAACTAAACTTGTGCCTCACTACCAACCGGCTAACTTTTCCGTTGAAGCCTATTTTTTCATCCTGGCGGCTATGATGGTGGTTTGTTTGGGGGCATTCTTACTTTTGAACTACCATCCAGCTGTGGCCCGAGAACGTCCcaataacataaatgtaaatgaagatCTCATATCAAGTTGGAAAAACAGGAAATCTGAACAGAAACCAATGATGCGTTCTCAAAAGTCTAGTCAGAAACCCAAGAGCATGTTTGGGACGGGGACACACACATGGATGCAAGTCATATACATCTACATTATGCTAGCATGGGTGACCGCTCTGACCAATACCGGTTTGCCATCAGTGCAATCATACTCTTGTTTACCATATGGAGACCAGGCCTATCACTGGTCAGCAACTATGGCGAATGTTGCCAATCCTATAGCTTGTTTCATCAGCATGTTTTACACTCAAAGGTCCTTAGTGTTGATGGGAGTTCTCACTTCAATTGGTTCTCTTATTGGATTTTACATTATGGGTATGGCTGTGTTGAGTCCATGTCCACTGCTAGTTAATGACACCTCTGGAGCCGTCCTTATTGTGTTGGCATGGTTCTTTTTCATCTTCATCCTGTCTTATGTAAAAGTGATTGTTGCCGTCATCTTGCGGGATGAAGGCCACAGCGCCCTTGTGTGGTGTGGAGCTGTAGTGCAGTTGGGCTCGATGTTGGGGGCGGTGACTATGTTTCCTTTGGTCAATATATATGACTTTTTCACCTCTGGTGAGCCATGTAACACATATTGTCTATGAGAAAATGTTCTGtaaattctataaaaattgattataataataattctatcaATCACGACTTGTGGAACATATGTTAAAAATCGACTGGACTTTTAGTCAGAAAGgagatttgtttaatataaaagtgaAGTGGCCAGGTGATccaaagtgcacacacacagcagtgcacacacacacccagagcTGTGGGTTAGGGTTTGGTGTCTTGCTCGAGGGTCTCACCTCAGTCATGACATTGAAGGTGAAGAGAGTGCTGATTTTTCACTCCCCCCACCTACAATCCCTGCCAGACCTGGGACTCGAACCCGTCCAGCTCTCTCTACATTAggccattaaaatatttttaaattaatgtgaaaaaagcttttttaatattgactATGGCTACTATGCAAATGTTTTACTATGTGTGTTAACAATGTTTGTTAAGTGTTTTATGCTGAtgtaaaaaaacgaaataaataaaaattgctcactta
>XM_043217193.1
AGAATAGGAACACCCACTCATGCAGGggatacatttctttctttgtacAGGACTTTGTCTTCATATGATCAGCCTCAGATCATACATTAAGGTTACGAAGTCTGATCTGAATTAGCATGGCCACATCTGTACTCACCCATGTCTTGGCTGGCCTGTTTGGCATGGGCTCCTGGGTCACCATCTGTGGTCTGTGGGTGGAGCTGCCTCTCATCGTTCCACACGTACCTGAGGGTTGGTATCTTCCCTCTTACATCTCTGTTATTGTCCAACTGGCCAATATCGGACCTCTGTTTGTCACATTAATGCACCGCTTCCGCCCAGGAAAGCTTAACGAGACTGCCGTTATCTATTTTATTGTTGGTTTCGGGATACTGGCGAGCCTTTTCCTGGCTTTCTTCTGGAGTGAGACGGTAGTGGTGCGAGGCGTAGAGCGCAGTGTTCCTCTGCTGctcctcatcttcttcatctCATTAGTGGATTGCACCTCTTCGGTGACGTTCCTTCCCTTCATGACGCAGCTCAAGGCGGAGTATCTCATGACATATTATGTAGGAGAAGGCCTGAGTGGTCTTGTCCCAGCTTTAGTGGCGATGGTTCAAGGTGTAGGTGTGATGGAATGTGTCAATGCATCTCAAATCCTCAGATCCAATGAAACACAACTTAATGTGTCGGAAAGAGAAACTAAACTTGTGCCTCACTACCAACCGGCTAACTTTTCCGTTGAAGCCTATTTTTTCATCCTGGCGGCTATGATGGTGGTTTGTTTGGGGGCATTCTTACTTTTGAACTACCATCCAGCTGTGGCCCGAGAACGTCCcaataacataaatgtaaatgaagatCTCATATCAAGTTGGAAAAACAGGAAATCTGAACAGAAACCAATGATGCGTTCTCAAAAGTCTAGTCAGAAACCCAAGAGCATGTTTGGGACGGGGACACACACATGGATGCAAGTCATATACATCTACATTATGCTAGCATGGGTGACCGCTCTGACCAATACCGGTTTGCCATCAGTGCAATCATACTCTTGTTTACCATATGGAGACCAGGCCTATCACTGGTCAGCAACTATGGCGAATGTTGCCAATCCTATAGCTTGTTTCATCAGCATGTTTTACACTCAAAGGTCCTTAGTGTTGATGGGAGTTCTCACTTCAATTGGTTCTCTTATTGGATTTTACATTATGGGTATGGCTGTGTTGAGTCCATGTCCACTGCTAGTTAATGACACCTCTGGAGCCGTCCTTATTGTGTTGGCATGGTTCTTTTTCATCTTCATCCTGTCTTATGTAAAAGTGATTGTTGCCGTCATCTTGCGGGATGAAGGCCACAGCGCCCTTGTGTGGTGTGGAGCTGTAGTGCAGTTGGGCTCGATGTTGGGGGCGGTGACTATGTTTCCTTTGGTCAATATATATGACTTTTTCACCTCTGGTGAGCCATGTAACACATATTGTCTATGAGAAAATGTTCTGtaaattctataaaaattgattataataataattctatcaATCACGACTTGTGGAACATATGTTAAAAATCGACTGGACTTTTAGTCAGAAAGgagatttgtttaatataaaagtgaAGTGGCCAGGTGATccaaagtgcacacacacagcagtgcacacacacacccagagcTGTGGGTTAGGGTTTGGTGTCTTGCTCGAGGGTCTCACCTCAGTCATGACATTGAAGGTGAAGAGAGTGCTGATTTTTCACTCCCCCCACCTACAATCCCTGCCAGACCTGGGACTCGAACCCGTCCAGCTCTCTCTACATTAggccattaaaatatttttaaattaatgtgaaaaaagcttttttaatattgactATGGCTACTATGCAAATGTTTTACTATGTGTGTTAACAATGTTTGTTAAGTGTTTTATGCTGAtgtaaaaaaacgaaataaataaaaattgctcactta

Function

symbol description
si:ch73-196l6.5 Predicted to enable riboflavin transmembrane transporter activity. Predicted to act upstream of or within riboflavin transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in Brown-Vialetto-Van Laere syndrome 1 and Fazio-Londe disease. Orthologous to human SLC52A3 (solute carrier family 52 member 3).

NR:

description
PREDICTED: riboflavin transporter 2

GO: NA

KEGG:

id description
K14620 SLC52A3, RFT2; riboflavin transporter 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043217191.1 True 2239 mRNA 0.42 3 16650729 16653496
XM_043217192.1 False 2152 mRNA 0.43 4 16650729 16653496
XM_043217193.1 False 1945 mRNA 0.44 4 16650729 16654802

Neighbor

gene id symbol gene type direction distance location
znf516 znf516,LOC107696949,LOC107592028,LOC107688320,LOC107563696 coding downstream 158003 16456613 ~ 16492726 (-)
ngly1 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding downstream 531550 16114281 ~ 16119179 (-)
satb1a satb1a,LOC107739638,LOC107593608,LOC107688330,LOC107748681,LOC107656649,LOC107592069 coding downstream 608765 16035473 ~ 16041964 (-)
tbc1d5 tbc1d5,LOC107748680,LOC107656654,LOC107688331,LOC107739565 coding downstream 617217 16011844 ~ 16033512 (-)
dazl LOC107656655,LOC107592019,LOC107593610,LOC107739568,LOC107688400,LOC107748682 coding downstream 639416 16006305 ~ 16011313 (-)
slc52a2 slc52a2,LOC107656640,LOC107739551,LOC107748697,LOC107592033,LOC107697026,LOC107563698,LOC107748696,LOC107697021,LOC107656639 coding upstream 410 16655212 ~ 16663534 (-)
eppk1 eppk1,LOC107656638,LOC107748699,LOC107697067,LOC107739550,LOC107592034 coding upstream 13160 16667962 ~ 16681330 (-)
pleca LOC107748698,LOC107697034 coding upstream 31323 16686125 ~ 16772130 (-)
eif3eb eif3eb,LOC107748702,LOC107592037,LOC107656637,LOC101483159,LOC108249253 coding upstream 119823 16774625 ~ 16783225 (-)
LOC122323461 LOC107592103,LOC107697214,LOC107656599,LOC107748761,LOC107563715,LOC107739630,LOC100537369 coding upstream 138447 16793249 ~ 16796520 (-)
G133783 NA non-coding downstream 48193 16571601 ~ 16602536 (-)
G133775 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding downstream 88753 16560106 ~ 16561976 (-)
G133774 sall3,sall3b,LOC107592031,LOC107696994,LOC107563697,LOC107656642,LOC107739555 non-coding downstream 90898 16559417 ~ 16559831 (-)
G133772 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding downstream 92279 16557441 ~ 16558450 (-)
G133771 NA non-coding downstream 99644 16550387 ~ 16551085 (-)
G133812 NA non-coding upstream 44887 16699689 ~ 16699907 (-)
LOC122323643 NA non-coding upstream 199436 16854238 ~ 16867352 (-)
LOC122323645 NA non-coding upstream 213055 16867857 ~ 16882412 (-)
G133856 si:dkey-240h12.4,LOC107599596,LOC108440884,LOC107565569,LOC107748765,LOC107739598,LOC107656625,LOC107667793 non-coding upstream 318704 16973506 ~ 16978942 (-)
G133865 NA non-coding upstream 319229 16974031 ~ 17041793 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other downstream 142134 16280957 ~ 16508595 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other downstream 726444 15922223 ~ 15924285 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other downstream 910400 15736947 ~ 15740329 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other downstream 990009 15659919 ~ 15660720 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other downstream 1002150 15644862 ~ 15648579 (-)
G133834 pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710 other upstream 202177 16856979 ~ 16869564 (-)
LOC122323321 NA other upstream 228185 16882987 ~ 16883480 (-)
G133842 NA other upstream 231658 16886460 ~ 16887000 (-)
LOC122324114 NA other upstream 235027 16889829 ~ 16890874 (-)
LOC122324112 NA other upstream 236890 16891692 ~ 16892581 (-)

Expression


Co-expression Network